Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31440 291 / 4e-100 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025574 [exp] 290 / 3e-99 AT2G31440 344 / 1e-120 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127400 [exp] 318 / 2e-110 AT2G31440 353 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF06105 [flax] [poplar] Aph-1 Aph-1 protein
Representative CDS sequence Show only first row Show all	>Lus10027036 pacid=23151624 polypeptide=Lus10027036 locus=Lus10027036.g ID=Lus10027036.BGIv1.0 annot-version=v1.0 ATGACGGTGGCTGCAGGGATCGGGTACGCACTGTTAGCATTAGGGCCTTCCCTCGCTCTCTTCGTCTCCGTCATCTCCAAAAAGCCCTTCCTCATCCTCA CCGTCCTCTCCAGTACATTGCTATGGCTGATAAGCTTAATCCTTCTGTCTGGGTTATGGCGCCCATTCCTTCCTCTCAATTCCGCTACCTCATGGCCTTT CGCTTTGCTGATTATCTCCTCAGTTCTGTTTCAAGAAGGCCTTCGGATTCTTTTCTGGAAGATTTACACGAGATTGGAAGATATATTGGATGCTTTTGCT GACAGGCTCTCCAAACCACGCTTGTACCCTACTGATAAGATGCTAATTGCTCTCGCTGGTGGTTTAGGTCATGGAGTAGCGCATGCTGTTTTCTTCTGTC TGAGTGTTTTGACACCAGCATTTGGTCCTGCAACATTCTTCACGGATCAGTGTTCACGGCTACCATTCTTTCTTGTTTCGTCAATTATTGCGCTTGCGTT TGTTACAATTCACACTTTCTCGATGGTTATCGCCTTCAACGGGTATGCAGAGGGGAATAAAGTAGATCAAATTTTCGTCCCATCTGTTCATCTCGTTGCA GGAATGGTGACGCTGATTAACTTTGGATCAGGAGGGTGCGGAATTGGGGTACCTATACTATATATAATCGCAATCCTGACGCTGCTGCATTGTGGGAAAA TGGTGTGGAGAAATCTTACAGAAATCCCAGTCCGGCTGTGA
AA sequence Show only first row Show all	>Lus10027036 pacid=23151624 polypeptide=Lus10027036 locus=Lus10027036.g ID=Lus10027036.BGIv1.0 annot-version=v1.0 MTVAAGIGYALLALGPSLALFVSVISKKPFLILTVLSSTLLWLISLILLSGLWRPFLPLNSATSWPFALLIISSVLFQEGLRILFWKIYTRLEDILDAFA DRLSKPRLYPTDKMLIALAGGLGHGVAHAVFFCLSVLTPAFGPATFFTDQCSRLPFFLVSSIIALAFVTIHTFSMVIAFNGYAEGNKVDQIFVPSVHLVA GMVTLINFGSGGCGIGVPILYIIAILTLLHCGKMVWRNLTEIPVRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31440			unknown protein		Lus10027036 [exp]	0	1
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	1.4	0.8148
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	2.4	0.8354
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	3.9	0.7640
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	6.5	0.7601
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	9.2	0.7850
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	11.7	0.7617
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	14.3	0.7272
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	15.6	0.7162
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	16.7	0.7513
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	19.1	0.7283

Compare expression of checked genes

Lus10027036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.