Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31450 404 / 2e-140 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 385 / 9e-133 ATNTH2 endonuclease III 2 (.1.2) AT3G47830 44 / 8e-05 DNA glycosylase superfamily protein (.1) AT3G10010 42 / 0.0009 DML2 demeter-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025575 [exp] 591 / 0 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10000431 [exp] 187 / 6e-59 AT2G31450 146 / 3e-43 DNA glycosylase superfamily protein (.1.2) Lus10001182 [exp] 56 / 4e-08 AT4G12740 464 / 2e-158 HhH-GPD base excision DNA repair family protein (.1) Lus10043074 [exp] 55 / 6e-08 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127600 [exp] 479 / 7e-170 AT2G31450 421 / 3e-147 DNA glycosylase superfamily protein (.1.2) Potri.014G198000 [exp] 59 / 2e-09 AT4G12740 523 / 0.0 HhH-GPD base excision DNA repair family protein (.1) Potri.015G071300 [exp] 43 / 0.0002 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein CL0198 [flax] [poplar] HHH PF00633 [flax] [poplar] HHH Helix-hairpin-helix motif
Representative CDS sequence Show only first row Show all	>Lus10027037 pacid=23151599 polypeptide=Lus10027037 locus=Lus10027037.g ID=Lus10027037.BGIv1.0 annot-version=v1.0 ATGTCCGAGCATGTCTCTTACTCTGCTCCGCCTACGCACTTGCATTTACACTATTCAATTTCCGGCGGGAGTTTCGCGAATCAGAATGTCGCCGATCACC AGAAGATTCTCTTCCCAACCCCTCCCATCCCAATCACCTTCACCCATTCCAGTCGCAGGAAAAAGAGGGCGGTGAAGGATGACGTGGAAGTTGCAGAAAG TACAGTTGAGACGGAGCCCATCACAGAAAAACTATCTGTCTTGCCTGACATTGAAGCATTTGCATACGGAAAGCCAAACATACCAGTCCAGTCAAAGAAG GCAAAACATGTCGCGGAGTTGCTTCCCTCGGACAAGGAAGTTGTCTCCACGATCAGGAAAACAGGCGGGCCACCTGTAAACTGGGAGAATGTCCTTGATG GAATCCGGAAGATGCGATCTTCTGAAGATGCTCCTGTAGATACTATGGGATGTGAGAAAGCTGGAAATTCTCTTCCTACTAAGGAAAGAAGATTTGCGGT CCTCGTCTCGTCACTGCTTTCCAGCCAGACCAAAGATCACGTAACTCATGGAGCAATTCAACGTCTCGGTCAGAATGGGTTGCTTCATCCTGATGCTGTT GAAAAGGCGGATGAAACAACTCTCAAAGACTTGATTTATCCCGTTGGTTTCTATACAAGAAAAGCAAGCAATATGAAGAAGATTGCAAAAATTTGTCTAG CAAAGTATGATGGGGATATACCGAATTCGTTGGAGGGTTTGCTGTCACTTCCAGGAATAGGGCCTAAGATGGCTCATTTGGTTATGAACGTGGCTTGGGA TGATGTACAAGGGATATGTGTAGATACTCATGTTCATCGTATTTGTAATCGTCTCGGTTGGGTTTCACGACCCGGCACAAAACAGAAAACTTCAACCCCT GAGCAAACGAGAGAGGCTCTTCAGCTGTGGCTTCCAAAGGAAGAATGGGTTCCCATAAACCCTCTCTTGGTAGGATTCGGGCAGACGATATGCACTCCTC TCAGACCTCGGTGTGCGATGTGTTCAGTGAGCGACTTATGCCCATCTGCATTCAAGGAGAGCTCGAGCCCGTCGTCCAAGTCGAAAAGATCGCCTAGGCT CAAGAAAACATCGTCAGCACCGTAG
AA sequence Show only first row Show all	>Lus10027037 pacid=23151599 polypeptide=Lus10027037 locus=Lus10027037.g ID=Lus10027037.BGIv1.0 annot-version=v1.0 MSEHVSYSAPPTHLHLHYSISGGSFANQNVADHQKILFPTPPIPITFTHSSRRKKRAVKDDVEVAESTVETEPITEKLSVLPDIEAFAYGKPNIPVQSKK AKHVAELLPSDKEVVSTIRKTGGPPVNWENVLDGIRKMRSSEDAPVDTMGCEKAGNSLPTKERRFAVLVSSLLSSQTKDHVTHGAIQRLGQNGLLHPDAV EKADETTLKDLIYPVGFYTRKASNMKKIAKICLAKYDGDIPNSLEGLLSLPGIGPKMAHLVMNVAWDDVQGICVDTHVHRICNRLGWVSRPGTKQKTSTP EQTREALQLWLPKEEWVPINPLLVGFGQTICTPLRPRCAMCSVSDLCPSAFKESSSPSSKSKRSPRLKKTSSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	0	1
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	2.0	0.8672
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	2.0	0.8835
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	5.9	0.8306
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	10.4	0.8295
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	11.7	0.8313
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	12.0	0.8332
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	13.0	0.7857
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	14.1	0.8299
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	15.4	0.7665
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	19.2	0.7628

Compare expression of checked genes

Lus10027037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.