Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30890 437 / 5e-157 Integral membrane HRF1 family protein (.1.2) AT3G59500 429 / 9e-154 Integral membrane HRF1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025577 [exp] 508 / 0 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10008752 [exp] 363 / 1e-127 AT3G59500 392 / 4e-139 Integral membrane HRF1 family protein (.1) Lus10007418 [exp] 344 / 1e-120 AT1G30890 345 / 2e-121 Integral membrane HRF1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028425 [exp] 458 / 3e-165 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.017G028500 [exp] 458 / 3e-165 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.007G129900 [exp] 454 / 1e-163 AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) Potri.014G175900 [exp] 351 / 3e-123 AT3G59500 378 / 5e-134 Integral membrane HRF1 family protein (.1) Potri.001G327700 [exp] 59 / 5e-11 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF03878 [flax] [poplar] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Lus10027039 pacid=23151503 polypeptide=Lus10027039 locus=Lus10027039.g ID=Lus10027039.BGIv1.0 annot-version=v1.0 ATGTATAACAACGTGGGAGCCCAGCCTGGAGTGCCTAGACCCCCAGCAGAGGCTCAAGCCAATCCTTTTGGCAATGCATTTTATGGAGCAGGTTCAGGAT TAATAAGAGGTGGACTGGGTGCTTATGGTGAGAAAATTTTGGGGTCAAGCTCTGAATATGTCCAAAGCAACATAACTAGATATTTCTCTGATCCGCAATA CTATTTTCAAGTGAATGACCAGTATGTGAGGAACAAGCTGAAAGTTATTCTGTTTCCATTCTTGCACAGGGGGCACTGGACACGAATTACTGAGCCAGTA GGAGGCCGCCTCTCATACAAGCCCCCGCTTTATGATATAAATGCGCCCGATTTGTACATTCCCTTTATGGCCTTCGGTACTTATGTCATTCTTGCTGGCA TGTCACTGGGACTTAATGGGAAGTTCAGCCCCGAAGCTCTCAACTGGATGTTCATCAAGGGATTGCTAGGCTGGTTCATGCAGGTTGCATTGCTTAAAAT GGCTCTGCTTTCGTTAGGAAGCGGAGAGGCACCCTTGTTAGACATCGTGGCATATGCAGGCTATATGTTCACCGGCCTTTGTTTCCCAGTCCTCGGGAAG ATTCTACTCGGATACTCTTACTACTTTGTGATGCCATGGTCATGTCTCTGCATGGGGATTTTCTTGGTCAAGACGATGAAGCGAGTTCTCTTTGCTGAGG TGAGGAGTTATGACTCAAGCCGGCACCATTACCTCTTGCTCTTCATTGCTTTAGCTCAGTTCCCAATTTTCATGTGGCTTGGCAACATCACTGTTAACTG GCTTCTCTGA
AA sequence Show only first row Show all	>Lus10027039 pacid=23151503 polypeptide=Lus10027039 locus=Lus10027039.g ID=Lus10027039.BGIv1.0 annot-version=v1.0 MYNNVGAQPGVPRPPAEAQANPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNITRYFSDPQYYFQVNDQYVRNKLKVILFPFLHRGHWTRITEPV GGRLSYKPPLYDINAPDLYIPFMAFGTYVILAGMSLGLNGKFSPEALNWMFIKGLLGWFMQVALLKMALLSLGSGEAPLLDIVAYAGYMFTGLCFPVLGK ILLGYSYYFVMPWSCLCMGIFLVKTMKRVLFAEVRSYDSSRHHYLLLFIALAQFPIFMWLGNITVNWLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	0	1
AT3G44150			unknown protein		Lus10029366 [exp]	1.0	0.9539
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	3.2	0.9278
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	4.0	0.9121
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	4.2	0.9373
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	4.5	0.9389
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	4.6	0.9080
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	10.4	0.9307
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	11.9	0.8856
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	12.0	0.9174
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	13.3	0.9045

Compare expression of checked genes

Lus10027039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.