Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59510 175 / 9e-53 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 100 / 1e-24 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 78 / 9e-17 Leucine-rich repeat (LRR) family protein (.1) AT5G49660 70 / 1e-13 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G25790 69 / 2e-13 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 68 / 3e-13 Leucine-rich repeat protein kinase family protein (.1) AT4G08850 68 / 4e-13 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G62230 68 / 5e-13 ERL1 ERECTA-like 1 (.1.2) AT1G35710 67 / 1e-12 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 67 / 1e-12 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025578 [exp] 384 / 1e-134 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 308 / 2e-104 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 306 / 4e-104 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 79 / 5e-17 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10028612 [exp] 79 / 1e-16 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023681 [exp] 76 / 1e-15 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10018911 [exp] 75 / 2e-15 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023323 [exp] 75 / 2e-15 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 71 / 5e-14 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028600 [exp] 219 / 8e-70 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 219 / 2e-69 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 98 / 7e-24 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 93 / 3e-22 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 89 / 2e-20 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 87 / 6e-20 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 86 / 1e-19 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.005G188700 [exp] 77 / 3e-16 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.012G139000 [exp] 77 / 5e-16 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.002G258400 [exp] 74 / 4e-15 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10027040 pacid=23151584 polypeptide=Lus10027040 locus=Lus10027040.g ID=Lus10027040.BGIv1.0 annot-version=v1.0 ATGTCCGACAATGCGATATCCGGCAGGCTGCCGGACCTCGCCAGAATGTGGCAGCTGAATACATTAGATGTCAGTTACAACGAGCTGTACGGAAACTTAC CGAGACTGCCTCGAAACCTGAAAACTCTGTTGATGACGCGAAACGTACTCTCCGGCCATGTCTCGCCGTTAATGCGTCTCCGGCGGTTGTTGGTTTTGGA TTTGAGCAGAAACCGGCTCTCCGGCCGGATCCTACGCGAAGTCCTCACTTTATCGACTTTAGTACGGCTAAACGTCTCGCACAACCACTTCACGGCGATC GACCAGATCGACTTCCCCGGCAGCGAGACTCGTCTTCAGGTGATCGACGCCAATGATAATCAATTGCACGGGCATTTGCCTCTTACATTGGCCGGATTGG AGAATCTCACGTCTCTGGACCTGTCACATAACTACTTGACCGGCTCAATATCGTCGGAGTTTGGAGCCAAAGTAGGGAAAGCGTGGACGGACCTCTTCTT GAATGACAATTTTCTCCATGGAAATATACCACCGAAGTTGGAAGACGATTCGCGGCAGATCAGAGGCAACTTTGCTAGCAACTGCTTGAAATGTCCGGCC ACCGTCCATCTCTGTCGAGGAGGTCAAAGGCCGCACGCTGTGTGTGCAGCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10027040 pacid=23151584 polypeptide=Lus10027040 locus=Lus10027040.g ID=Lus10027040.BGIv1.0 annot-version=v1.0 MSDNAISGRLPDLARMWQLNTLDVSYNELYGNLPRLPRNLKTLLMTRNVLSGHVSPLMRLRRLLVLDLSRNRLSGRILREVLTLSTLVRLNVSHNHFTAI DQIDFPGSETRLQVIDANDNQLHGHLPLTLAGLENLTSLDLSHNYLTGSISSEFGAKVGKAWTDLFLNDNFLHGNIPPKLEDDSRQIRGNFASNCLKCPA TVHLCRGGQRPHAVCAAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	5.0	0.8052
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	7.7	0.8263
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	17.6	0.8187
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	21.0	0.7901
					Lus10019410 [exp]	24.6	0.8176
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10035113 [exp]	29.4	0.7961
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	29.9	0.8072
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	31.4	0.7863
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	40.5	0.7612
					Lus10013654 [exp]	41.0	0.7928

Compare expression of checked genes

Lus10027040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.