Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07565 101 / 2e-27 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G60670 52 / 2e-08 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 47 / 8e-07 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027045 [exp] 233 / 1e-75 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10025582 [exp] 218 / 8e-74 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 219 / 3e-72 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10019374 [exp] 61 / 6e-13 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10000123 [exp] 61 / 6e-13 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10013072 [exp] 50 / 1e-07 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 50 / 1e-07 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 47 / 1e-06 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 44 / 1e-05 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023300 [exp] 105 / 2e-28 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.014G197300 [exp] 99 / 9e-26 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 82 / 1e-19 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.010G097000 [exp] 53 / 1e-08 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.008G145100 [exp] 50 / 8e-08 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027044 pacid=23151538 polypeptide=Lus10027044 locus=Lus10027044.g ID=Lus10027044.BGIv1.0 annot-version=v1.0 ATGGCGAATCCATCGGGGAAGCAACTTCAAAATCGTAATCAGGATGCTCCGACTAGTAATAACAACAATAACAACAATGATTCTTCTTCTTCACTCAACG GGACCAATCCGGCTAACGGATATCTGGAGAGTTCGAATCCCACCGTCGCTGCTTTGAAGCATAACCCTGGCATCTCTAACGATTGGACTCCGGAAGAGCA GTCGATACTAGAGGATGGCCTTGCCAAGTATGCATCGGAGTCCAACATAGGCCGGTATTCAAAGATTGCTCAACATAGGCCGAAGAAGGAATCTAGTAAG AAAAGGAAGGAGGAAAACGTAAGAAGAGGCAAGGATAAGAAGGAAAAACTTACTGATGCATCAACAAAGCCATCTTCTACCGTTGTCCGCCCTAATGCTC CTGCATATGCAAATACAGTGGCTCCTACTGACTATGATGATGGCATCTCTTTTAAAGGTTGTTAA
AA sequence Show only first row Show all	>Lus10027044 pacid=23151538 polypeptide=Lus10027044 locus=Lus10027044.g ID=Lus10027044.BGIv1.0 annot-version=v1.0 MANPSGKQLQNRNQDAPTSNNNNNNNDSSSSLNGTNPANGYLESSNPTVAALKHNPGISNDWTPEEQSILEDGLAKYASESNIGRYSKIAQHRPKKESSK KRKEENVRRGKDKKEKLTDASTKPSSTVVRPNAPAYANTVAPTDYDDGISFKGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07565			Protein of unknown function (D...		Lus10027044 [exp]	0	1
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	10.9	0.7950
AT3G02065			P-loop containing nucleoside t...		Lus10006736 [exp]	33.2	0.7200
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	33.5	0.7884
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	41.2	0.7551
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	46.6	0.7518
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	57.4	0.7388
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10037411 [exp]	58.1	0.7463
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	67.7	0.7200
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	74.8	0.6933
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	80.4	0.6851

Compare expression of checked genes

Lus10027044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.