Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07565 209 / 4e-64 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT2G43400 198 / 2e-56 ETFQO electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) AT1G10820 104 / 3e-25 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G60670 102 / 2e-24 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G68160 77 / 2e-15 Protein of unknown function (DUF3755) (.1) AT2G43470 56 / 8e-09 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025581 [exp] 265 / 4e-85 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025582 [exp] 256 / 9e-84 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 233 / 6e-75 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025584 [exp] 209 / 1e-61 AT2G43400 277 / 8e-86 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10013072 [exp] 133 / 3e-35 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 127 / 3e-33 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 128 / 6e-33 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 125 / 4e-32 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10000123 [exp] 60 / 2e-11 AT3G07565 44 / 1e-06 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023300 [exp] 217 / 1e-67 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.014G197300 [exp] 209 / 4e-64 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.017G027500 [exp] 211 / 3e-61 AT2G43400 951 / 0.0 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Potri.007G132700 [exp] 200 / 4e-61 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.008G145100 [exp] 130 / 5e-34 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.010G097000 [exp] 126 / 2e-32 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0344 [flax] [poplar] 4Fe-4S PF05187 [flax] [poplar] ETF_QO Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S CL0344 [flax] [poplar] PF12579 [flax] [poplar] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Lus10027045 pacid=23151514 polypeptide=Lus10027045 locus=Lus10027045.g ID=Lus10027045.BGIv1.0 annot-version=v1.0 ATGGCGAATCCATCGGGGAAGCAACTTCAAAATCGTAATCAGGATGCTCCGACTAGTAATAACAACAATAACAACAATGATTCTTCTTCTTCACTCAACG GGACCAATCCGGCTAACGGATATCTGGAGAGTTCGAATCCCACCGTCGCTGCTTTGAAGCATAACCCTGGCATCTCTAACGATTGGACTCCGGAAGAGCA GTCGATACTAGAGGATGGCCTTGCCAAGTATGCATCGGAGTCCAACATAGGCCGTTATTCAAAGATTGCTAAACAGCTCCCGTGTAAGACAGTTCGAGAT GTTGCTCTGCGTTGCAGATGGATGTCGAAAAAGGAATCTAGCAAGAAAAGGAAGGAGGAAAACGTAAGAAGAGGCAAGGATAAGAAGGAAAAACTTACTG ATGCATCAACAAAGCCATCTTCTACCGTTGTCCGCCCTAATGCTCCTGCATATGCAAATACAGTGGCTCCTACTGACTATGATGATGGCATCTCTTTTAA AGCTATTGGCGGAGTAACTGGAGACCTCCTCGAGGAAAATGCACAGGCATTGAGTCAAATCACGTCTAATCTTTCAACCATGCAGGTGACTGCTTTTGCT GTGGCTGTTCATGACTTAACTGGTTCTCCTTCCTTTCTCCAGATGCAGGATAACATCAACCTACTTTGCCAGACTCGTGATAACTTCCTCAAAATTATGA ACAAGTACACTTCAGAGTTTGCCCTTCTTTTACTCCTTATATCTCCTCTCAATCTCTCTTGCTTCAACGACGTTCCGGAGATAATGAAACAGATGCCACC ACTTCCAATACTCTGTGACGATAATGGCGGTGTAGTTGGAATCGGGACTAATGATATGGGCATTGCAAAAAATGGCTCCAAGAAGGAGAATTTTCAGCGT GGGATGGAGTTGAAGGGTCGAGTAACACTTCTAGCTGAAGGTTGCCGAGGATCATTATCAGAGAAAATGATCAAAAAGTACAAATTGAGGGAAAAGCGAA ATGCTCAACATCAGACATATGCATTAGGAATCAAAGAGGTTTGGGATATCGATGAGAGTAAGCATAAACCTGGTGCAATTATTCACACATTGGGTTGGCC GTTAGATCACAAAACATACGGCGGTTCATTTCTGTACCACATGAATGAAAGACAGGCTTTTGATCACGGGCTGATCCCTGGATTGGCTGTGAGTGCAGTG GAACAGAGCAACACGAATCATGATCATGATCAACCAGCACACCTTAAACTCAAGGACCCTGCCGTCCCTTCTCAAGTCAATTTGCCAGAGTACGATGGGC CTGAGTCACGATATTGTCCTGCTCGTGTATACGAGTACAACCCAGATGAGAAAGGCGAGTTGAAGCTACAGATCAATGCCCAAAATTGCGTGCACTGCAA GGCATGTGACATAAAGGACCCAAAGCAAAACATCGAATGGACAGCTCCAGAAGGCGGTGGTGGCCCTGGCTACTCAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10027045 pacid=23151514 polypeptide=Lus10027045 locus=Lus10027045.g ID=Lus10027045.BGIv1.0 annot-version=v1.0 MANPSGKQLQNRNQDAPTSNNNNNNNDSSSSLNGTNPANGYLESSNPTVAALKHNPGISNDWTPEEQSILEDGLAKYASESNIGRYSKIAKQLPCKTVRD VALRCRWMSKKESSKKRKEENVRRGKDKKEKLTDASTKPSSTVVRPNAPAYANTVAPTDYDDGISFKAIGGVTGDLLEENAQALSQITSNLSTMQVTAFA VAVHDLTGSPSFLQMQDNINLLCQTRDNFLKIMNKYTSEFALLLLLISPLNLSCFNDVPEIMKQMPPLPILCDDNGGVVGIGTNDMGIAKNGSKKENFQR GMELKGRVTLLAEGCRGSLSEKMIKKYKLREKRNAQHQTYALGIKEVWDIDESKHKPGAIIHTLGWPLDHKTYGGSFLYHMNERQAFDHGLIPGLAVSAV EQSNTNHDHDQPAHLKLKDPAVPSQVNLPEYDGPESRYCPARVYEYNPDEKGELKLQINAQNCVHCKACDIKDPKQNIEWTAPEGGGGPGYSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	0	1
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	3.5	0.9773
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	3.7	0.9687
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	4.0	0.9786
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	4.5	0.9742
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	5.7	0.9747
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	6.9	0.9677
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	7.1	0.9764
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	7.3	0.9741
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	8.9	0.9645
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	9.2	0.9643

Compare expression of checked genes

Lus10027045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.