Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30710 526 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT1G04830 96 / 4e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G13730 87 / 4e-18 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT3G07890 79 / 1e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G02460 78 / 2e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 77 / 4e-15 PAM1 plant adhesion molecule 1 (.1) AT2G43490 77 / 1e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 74 / 2e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 72 / 4e-13 RabGAP/TBC domain-containing protein (.1.2) AT2G37290 72 / 5e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008148 [exp] 541 / 0 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 537 / 0 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10030846 [exp] 133 / 1e-32 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030630 [exp] 116 / 3e-27 AT3G47570 426 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 115 / 7e-27 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 113 / 5e-26 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 109 / 6e-25 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 108 / 1e-24 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 108 / 1e-24 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134200 [exp] 539 / 0 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G131300 [exp] 96 / 6e-21 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 96 / 6e-21 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 94 / 3e-20 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 93 / 4e-20 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.008G007866 [exp] 82 / 3e-16 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 80 / 1e-15 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G023200 [exp] 77 / 8e-15 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.006G099100 [exp] 78 / 9e-15 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G132900 [exp] 77 / 1e-14 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10027046 pacid=23151589 polypeptide=Lus10027046 locus=Lus10027046.g ID=Lus10027046.BGIv1.0 annot-version=v1.0 ATGATTCAACTAGATGAGAGGTCGCCGCCTCCCCAGTCTTGGGCTGAGGAGTTGAGGTTGCGGCTGCAATTTAAGCAGAAAGATGAATTGTCCGGAGATG AAAGAGAAAGATGTTTATTCGGGCTTCGGGATCTAGCTTGGAGTGGTGCACCAACATACATGCGGCCTGATATTTGGAGACTTCTCTTAGGATACGCACC GTCAAATTCGGATCGAAGGGAGGGGGTTTTGAAGAGGAAGCGGCTCGAGTATCTCGAATGTGTTGCTCAATTCTACGACATTTCGGATTTCGAACGCTCG GAAGATGAAGCCAACATGCTTCGTCAGATATCTGTGGATTGCCCAAGAACAGTACCAGATGTTACGTTCTTTCAACTGCCAGAGGTCCAGAAATCCCTGG AACGTATTCTTTATATATGGGCGATTCGGCATCCGGCAAGTGGGTATGTTCAGGGGATAAATGATCTGGTGACGCCATTTCTGGTGGTATTCTTGTCTGA ACACTTGGAAGGTGAAATAGAGAACTGGTCTATTTGTGATCTGCCACCAAACAAGATACTTGACATCGAAGCAGATTGCTACTGGTGCCTCTCCAAGTTG CTGGATGGCATGCAAGACCACTACACTTTTGCTCAGCCTGGAATCCAGAGGCTTGTTTTTAAGCTCAAGGAGCTGGTTAGACGAATTGATGAATCCGTGG CAAAACACATAGAAGAACATGGACTTGAATTCATCCAATTCGCATTTCGTTGGTTCAATTGCCTACTGATACGTGAGATACCATTTCATCTCGTAACACG TCTCTGGGACACTTATCTAGCTGAAGGTGATGCACTGCCTGATTTCCTCGTCTACCTATTTGCAAGCTTTCTTTTGAATTGGTCAGAGCAGCTTAAGAAG CTAGATTTCCAGGAGATGGTGATGTTTCTGCAGCACCTTCCAACTCACAGCTGGACATCCAAAGAACTAGAGATGATACTTTCCAAGGCTTATATGTGGC ATACCATAATGGGGAATGAAATTTCATTACAAGGTGATATATACAGTTATGGTATCATGTTGCTTGAGATGTTTACTGGACGAAGACCTGTAGAAGATAC TTTCAAAGAAGGCTTAAACCTCCATAACATTGTCCAAAGTGCTATGTCAAACCAACAAATAATGAAAGTTGTTGATCCTATTGTACTCAACGAACTACTT TGTAGGCCGAAAACCCATTGCAACGATCCTACTAATAGCAGCTCAGAGGAAGCAGAAAAAGGCTATAAGCACAAGACAAGCTCTAGGAGACAGCAGGATT TGGCGAGTTCTCTCCACGTCCATGAAGTTTCAAAGCTCATTGCCAAACCCAAGCCTCCAAAAGATAGTGCAGAAGCAACGTCGGTAGCTGTATCCCTCGA CCCCACGACTTTGATTGATTATGATCCTGATTGTTTACTGTTGAGATTTTGGAGGGACTTTCTTCTTGGGAGTTGTTGGGGACATCGAGGCTACCTAGTG CCACCACAAGCTCGAGCTCTTTCGCCTTTTTTTGGGTGCATTTTAAAGCCACTTCGAGTTTTGTAA
AA sequence Show only first row Show all	>Lus10027046 pacid=23151589 polypeptide=Lus10027046 locus=Lus10027046.g ID=Lus10027046.BGIv1.0 annot-version=v1.0 MIQLDERSPPPQSWAEELRLRLQFKQKDELSGDERERCLFGLRDLAWSGAPTYMRPDIWRLLLGYAPSNSDRREGVLKRKRLEYLECVAQFYDISDFERS EDEANMLRQISVDCPRTVPDVTFFQLPEVQKSLERILYIWAIRHPASGYVQGINDLVTPFLVVFLSEHLEGEIENWSICDLPPNKILDIEADCYWCLSKL LDGMQDHYTFAQPGIQRLVFKLKELVRRIDESVAKHIEEHGLEFIQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYLFASFLLNWSEQLKK LDFQEMVMFLQHLPTHSWTSKELEMILSKAYMWHTIMGNEISLQGDIYSYGIMLLEMFTGRRPVEDTFKEGLNLHNIVQSAMSNQQIMKVVDPIVLNELL CRPKTHCNDPTNSSSEEAEKGYKHKTSSRRQQDLASSLHVHEVSKLIAKPKPPKDSAEATSVAVSLDPTTLIDYDPDCLLLRFWRDFLLGSCWGHRGYLV PPQARALSPFFGCILKPLRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	0	1
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10005324 [exp]	3.9	0.7777
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	4.5	0.7332
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	7.1	0.7531
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	16.4	0.7244
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	35.0	0.6863
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10002483 [exp]	40.7	0.7306
AT1G29640			Protein of unknown function, D...		Lus10011993 [exp]	65.6	0.6605
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	79.2	0.6036
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10013211 [exp]	80.5	0.6564
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	86.2	0.6011

Compare expression of checked genes

Lus10027046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.