Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 107 / 1e-24 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 102 / 2e-22 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 96 / 9e-21 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 84 / 1e-16 hydrolases;protein serine/threonine phosphatases (.1) AT1G51538 65 / 8e-11 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 57 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT4G16050 57 / 3e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50770 51 / 2e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50830 50 / 3e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50820 50 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020970 [exp] 681 / 0 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10011950 [exp] 457 / 6e-160 ND 40 / 0.001 Lus10008761 [exp] 333 / 2e-109 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001981 [exp] 321 / 5e-107 AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012639 [exp] 296 / 2e-97 ND / Lus10011962 [exp] 288 / 3e-94 ND / Lus10042635 [exp] 280 / 3e-90 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1) Lus10000686 [exp] 249 / 3e-80 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008435 [exp] 259 / 6e-80 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10027047 pacid=23151600 polypeptide=Lus10027047 locus=Lus10027047.g ID=Lus10027047.BGIv1.0 annot-version=v1.0 ATGGCGAAAACGAAAGGCGGAGGTAAATCGCACAGTCGGGATCCGGTAGAGGAAGAAACCGATGGGATCCAGAAGATGAGAGGGAAAGGAAAACAAGTTG GTGTTTTGGATCGGATGAAGGAGCGGGTGGTCACCGCTTCTCGACGGAAAGAGGGAGAGGCAGCGAAGAAGAACAAGAAGTTGCGTATCTACGACTCCCC TGACCGGTACCCTCCTGTTACGTACCCGGCGAGGTCGTATCCGGAGGATGATGACGAGGATGTGGGTCCACCGCCGGGGTTTGAGTACGACGACACACAG ACTTCCCCGCAGATGGCTTCTCCACACATGGCTCCTCTGCACACGAGCTCTCCGCACTTGGCTTCTACGGGCTCGTCACATGCCTCCGCCAGTGTCGGCG TGAGAGGAGGGAAGCCTAGCCGTCTCGCGCGGGTCCGGGAGGAGGATCCCGCCAGTGCCGTAGACTTTTTCGGGCTTAGTCGTACATGGGAGCTCACAGC TGGGATTCCCGAGGGGGGACCGAGGACGCCGACAGTGATCCCGAGCTTCGGGGGTCACATTGCACACTACTTGTGGGAGTCGGGCGAGGGCTACAGGGAT CTTAAGGTATTCAGGTTCCTTAAGCGCCCTAAGCAGTGGGACACTGTGAGCGAGTTCGACATCCAGACTCGGACCATTTGGCCGATCATGCAGGAGTCCG GACTTCTTCACTTGGGCCGATGCATGTCGACCCACTTTGATGAGCCTCTGCTGGAGGCATTTGTTGAGAGGTGGCAGCCGGATACTAACACCTTTCACAT GCCGTGGGGAGAGATGACGATCACTTTGCACGACGTCTTCCACATTCTCCGTGTCCCGGTCACTGGACGACCGCTTCATAAGCCCCGACCTCTGGTTGAC TTGAGAGCGGGTGTAGCGGAGTCGCTTGGCTTCAGCTCAGCTGCTGCGTTGGAGTACGCGGTCAGGGGGGAGACGGTTGGGCCACCCCTGTATGATCATG GTGCCATGCACGAGAGGGACATGATCTCTCTCGGTAAGCATATGGGGGACGATATTGCTTACAGGGTATTCCTCTTCTGTCTTCTTGGAGGTACCCTTTT CCAGGATAGATCGGCTGATCGATCACGGCTTCTCGGTTGGGAGTACTTCATGGGTCCGATCAGTGATGTGCCGGAGTATGCTTGGGGTGCTGGTGCGCTA GCCTGGTTGTATCGGGAGTTGGGGAAGGCTAGCAGGGCGGATGCCAGGGCGATGTCAGGGTGTGTGACGTTGCTCCAGTCCTGGATCTACGAGTACTGCC CGGGGGTCAGGCCTCCGAGGACGCTTAGACAGGAGCGTAGGGCAGGAGAGGCTTTAGCTGGTAGGTGGGACAGTGCAGAGACACCTAGTCGGGGTGCGGG CTTCCTACGAGAGAGGTTGGACTACTACCGTCGCCTCCTCGATAACATGGATTCCCGTGATGTTTGTTGGCTTCCTTTTGGACCTCATCCCGACATTGAG GTCCCCGCCACGACCTACCGTGGTCTCCTACGTTGCGCCGATGTTGGGGAGTTCTACGATTCTTGTAGGGTAGTTCTACGATTCTTATCGTGTGCTCCGA CAGTTTGGCTTCACACAGGTCATCCCCCCCTCGATCCCTGTGCCGTTACGGGCCATTAG
AA sequence Show only first row Show all	>Lus10027047 pacid=23151600 polypeptide=Lus10027047 locus=Lus10027047.g ID=Lus10027047.BGIv1.0 annot-version=v1.0 MAKTKGGGKSHSRDPVEEETDGIQKMRGKGKQVGVLDRMKERVVTASRRKEGEAAKKNKKLRIYDSPDRYPPVTYPARSYPEDDDEDVGPPPGFEYDDTQ TSPQMASPHMAPLHTSSPHLASTGSSHASASVGVRGGKPSRLARVREEDPASAVDFFGLSRTWELTAGIPEGGPRTPTVIPSFGGHIAHYLWESGEGYRD LKVFRFLKRPKQWDTVSEFDIQTRTIWPIMQESGLLHLGRCMSTHFDEPLLEAFVERWQPDTNTFHMPWGEMTITLHDVFHILRVPVTGRPLHKPRPLVD LRAGVAESLGFSSAAALEYAVRGETVGPPLYDHGAMHERDMISLGKHMGDDIAYRVFLFCLLGGTLFQDRSADRSRLLGWEYFMGPISDVPEYAWGAGAL AWLYRELGKASRADARAMSGCVTLLQSWIYEYCPGVRPPRTLRQERRAGEALAGRWDSAETPSRGAGFLRERLDYYRRLLDNMDSRDVCWLPFGPHPDIE VPATTYRGLLRCADVGEFYDSCRVVLRFLSCAPTVWLHTGHPPLDPCAVTGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	2.2	0.9488
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	3.2	0.9571
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	4.0	0.9351
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	5.3	0.9511
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	5.8	0.9556
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	6.0	0.9450
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	7.2	0.9230
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	7.3	0.9522
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	11.2	0.9309
AT5G19875			unknown protein		Lus10006311 [exp]	11.5	0.9023

Compare expression of checked genes

Lus10027047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.