Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59780 545 / 0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G23060 81 / 3e-16 CaS calcium sensing receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025587 [exp] 881 / 0 AT3G59780 510 / 5e-173 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10000867 [exp] 71 / 7e-13 AT5G23060 466 / 2e-164 calcium sensing receptor (.1) Lus10009609 [exp] 71 / 9e-13 AT5G23060 466 / 3e-164 calcium sensing receptor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128300 [exp] 572 / 0 AT3G59780 610 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G097901 [exp] 146 / 9e-42 AT3G59780 150 / 3e-43 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G095833 [exp] 144 / 3e-41 AT3G59780 153 / 2e-44 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G098950 [exp] 111 / 4e-28 AT3G59780 95 / 2e-22 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G182410 [exp] 106 / 8e-27 AT3G59780 126 / 2e-34 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G052200 [exp] 85 / 2e-17 AT5G23060 490 / 6e-174 calcium sensing receptor (.1) Potri.019G098001 [exp] 52 / 3e-07 AT3G59780 91 / 8e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10027050 pacid=23151605 polypeptide=Lus10027050 locus=Lus10027050.g ID=Lus10027050.BGIv1.0 annot-version=v1.0 ATGCTACCACTGCCGTCATGGAATGTAAAGCATCATCAAAGAGTGTCGTCCTTTAGGACGCAAGCTGCAAAGATGGACACTTTGATTAGATCCATTGAAC CAGAAATCGTCACTTTTGGTAATATAGCGGGAGAGAACACAAACTTGGCATCTACTTCAAGCCTTGTCAGTGATAGTTCGCCATACAGTGCGACAGCTAG CTTCGATGATCTTTTCACAACGGTTCAGGACTCTGTAAATAAAGGGGAGGAATTTGTGACAAGCTCACTAAACTCAGTCAACTCATCACTGACCTCTATT ACTAAAAGTGCATCCCAAGCGGTAGATGATGTCTGGAGCAGAGTTTTTTCAAATATTGATCAAACAGGAGAACTCGCTGGCAACAGATTGTCTGGTTTGT TAAATGATTCAAAAGATACCACAACCAAACTAACCGGAGTTTCAGCTGATATTTTGAGAAGGACGATTGTTATAATAGAGGATTCTACTGTGAAGGGGGC TTATTTTGTTGTTTATTCTTATGGCTCTGCAAAAGAACTGCTTCCTCCAGAGATCAGGGATGCAGTGAATGTCACTGAAGATAGAGTTACTCAGGTTTTG AGGCCTGTCGGAACAACTTTACAGGAGGTATCCACTGCTATTGGTGGGCTGGAGAGAAGATTTGGCTTGGATTCAGATGATCCTGTTATCACATTCATTC TTTCCTTTGGATCATTGGGGGCTTTATGGGCTTTTTATTGGATATGGACGTATTCTGGATATGCTGGAGAGTTATCTCCCGAGGCAACTCTAGAATTCTT GAAATCAGAGAAGAAAGCTATGCTCATTGATGTCCGCCCTGAGGCAAGTACCACTATATTTTTCATGCGAGTTCTTAGAGAGAGAGACGGAGTTCCTGAT CTCAGGCGAGCAACTCGTTCTCGCTATGCCAGTGTCAATTTACCTGAGGTTGATAGCTCAGTCCGAAAGTTGTTAAGAGGTGGAAAAGAGATTGAAGATT CCCTAATTGCTGCAGTCATAAGGAACTTAAAAGCTGTTCAGGACAGGTCAAATGTCATAATTATGGATGCTGACGGGACTGCCTCCAAGGGCGTTGCAAG ATCCTTGAGCAAGCTTGGCGTTAAGAAAGCATACTTGGTCAAAGGTGGGTTCAACTCTTGGGTGAAGCACGACCTCAGAATCAAGGAACTCAAACCTGAG ACAACATTGACCGTGCTCAATGAGGAAGCAGAAGCAATCTTGGAAGGGGTCAGCCCTTTACAAGTAATTGGTTACGTAGTGGGTTTGCTTGCAGCCTCAT ATGCTCTACTTGAATGGGAGAAGTCTCTGCAGCTCATAGGTGTCGTTGGTCTTCTACTGACAATCTATCTCCGGTTAGCTACCTATGAATCGGCAGAGGA TTTGACCGAAGATGTCAGCTTGTTGCTAGTTCCTGTTAAACTGGGGAGTAGGGCATTTTCATGGGCTGCCGAGAAGTTGGAGACCAATGGGAACGGACTC CCGACCTCGCCTTCTTCATCAGACGTTCAAAACCGTGTGCTTCAAGCTGCTGCAAAGCATGAATCTCAACCATCTTCTGAGACTGAAGGGACCCAAAATT CGTCAGCTGACACAGTGATGAATGAGAATGCTGATCTTTCAGAAGCATAG
AA sequence Show only first row Show all	>Lus10027050 pacid=23151605 polypeptide=Lus10027050 locus=Lus10027050.g ID=Lus10027050.BGIv1.0 annot-version=v1.0 MLPLPSWNVKHHQRVSSFRTQAAKMDTLIRSIEPEIVTFGNIAGENTNLASTSSLVSDSSPYSATASFDDLFTTVQDSVNKGEEFVTSSLNSVNSSLTSI TKSASQAVDDVWSRVFSNIDQTGELAGNRLSGLLNDSKDTTTKLTGVSADILRRTIVIIEDSTVKGAYFVVYSYGSAKELLPPEIRDAVNVTEDRVTQVL RPVGTTLQEVSTAIGGLERRFGLDSDDPVITFILSFGSLGALWAFYWIWTYSGYAGELSPEATLEFLKSEKKAMLIDVRPEASTTIFFMRVLRERDGVPD LRRATRSRYASVNLPEVDSSVRKLLRGGKEIEDSLIAAVIRNLKAVQDRSNVIIMDADGTASKGVARSLSKLGVKKAYLVKGGFNSWVKHDLRIKELKPE TTLTVLNEEAEAILEGVSPLQVIGYVVGLLAASYALLEWEKSLQLIGVVGLLLTIYLRLATYESAEDLTEDVSLLLVPVKLGSRAFSWAAEKLETNGNGL PTSPSSSDVQNRVLQAAAKHESQPSSETEGTQNSSADTVMNENADLSEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	0	1
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	1.0	0.9600
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	2.0	0.9437
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	8.8	0.9352
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	10.4	0.9334
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	10.6	0.9316
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	10.7	0.9346
AT5G56850			unknown protein		Lus10008560 [exp]	12.4	0.9185
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	13.3	0.9186
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	13.3	0.9349
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	13.4	0.8956

Compare expression of checked genes

Lus10027050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.