Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05730 209 / 3e-70 Eukaryotic protein of unknown function (DUF842) (.1) AT2G31725 207 / 2e-69 Eukaryotic protein of unknown function (DUF842) (.1) AT2G43720 174 / 2e-56 Eukaryotic protein of unknown function (DUF842) (.1) AT1G05740 132 / 3e-40 Eukaryotic protein of unknown function (DUF842) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025588 [exp] 308 / 3e-109 AT1G05730 221 / 5e-75 Eukaryotic protein of unknown function (DUF842) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127400 [exp] 232 / 3e-79 AT2G31725 236 / 4e-81 Eukaryotic protein of unknown function (DUF842) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05811 [flax] [poplar] DUF842 Eukaryotic protein of unknown function (DUF842)
Representative CDS sequence Show only first row Show all	>Lus10027051 pacid=23151524 polypeptide=Lus10027051 locus=Lus10027051.g ID=Lus10027051.BGIv1.0 annot-version=v1.0 ATGGATCACATAGCAGCAGCTCAGCAGGCAGCTCTGCAACAGCAGATTTCAGAGAGACTGAAGCGGAAGCTTGAACAAGTCAATTCAGCCGCTCAATCCC ACCTCTCCCCTGTTCAAGACCACATCAATTTCACCCTTCAGCAAGCATATTTCAAATGCGCTTACGAATGCTTTGATAGGAGAAGGAAACAGGAAGAAAT AGCCAGCTGTGTTGAGAATTGCAGTGTCCCAGTTCTCAACGCCCAGCGTCATTTTGAGGACGAGATGGCCAAGTTTCAGGCAAGTTCTATTTGCCCCTTT CCTCATCTGGAAAGGATGAACCGGTCTCTTATGGTGTGCCAAGACAAGTTTGAAGCTGCTAAGCTACAGCAAGTTGGGTCAGATGCCATGAACACATTGG AGTCGTGTGTGGACGGAGCCATTCAAGAGAACGCCAGTACACTTCCGCACATAGTCCGGAAGTTGAAAACGTCTCTTGCCATCAGAGATGAGGTGTAG
AA sequence Show only first row Show all	>Lus10027051 pacid=23151524 polypeptide=Lus10027051 locus=Lus10027051.g ID=Lus10027051.BGIv1.0 annot-version=v1.0 MDHIAAAQQAALQQQISERLKRKLEQVNSAAQSHLSPVQDHINFTLQQAYFKCAYECFDRRRKQEEIASCVENCSVPVLNAQRHFEDEMAKFQASSICPF PHLERMNRSLMVCQDKFEAAKLQQVGSDAMNTLESCVDGAIQENASTLPHIVRKLKTSLAIRDEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10038851 [exp]	2.2	0.8257
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	3.2	0.8066
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	3.7	0.7650
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	4.5	0.8206
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	5.8	0.7591
AT5G22650		ATHD2B, HDT2, H...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10020543 [exp]	6.0	0.7723
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	6.2	0.8188
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	11.8	0.7719
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	17.3	0.8035
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	19.9	0.7703

Compare expression of checked genes

Lus10027051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.