Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033051 [exp] 139 / 5e-43 ND / Lus10024749 [exp] 129 / 4e-39 ND / Lus10006395 [exp] 129 / 8e-39 ND / Lus10003831 [exp] 131 / 1e-38 ND / Lus10004816 [exp] 119 / 1e-33 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10002987 [exp] 106 / 6e-31 ND / Lus10021791 [exp] 99 / 9e-29 ND / Lus10036998 [exp] 107 / 1e-28 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10022574 [exp] 100 / 7e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027052 pacid=23151608 polypeptide=Lus10027052 locus=Lus10027052.g ID=Lus10027052.BGIv1.0 annot-version=v1.0 ATGAGTACTACGGGAGTTGATGTCAGTGACGGAATTGATTACTCTGACTGGTTATTATCTGACGATGTGTATGACACTGTTGGTGAAGCGGCGCAAGCAG CAAAAAAGATTGTTATAACGCTTAATTTCCATCTGATCAATGAGTCCAACAAAAGCAATAACTCGAAAAAGGAGTGTCGGGTGTATCTGTATTGCTCACA TGGACTTGCTCGCAAGTTTGACGGTTCAGACCCGCCGAAATGGGCGACGAAGTCAAAGAAGTGTAATTGTCCATTCAAACTTCCCAAAATTTTGAATGTG TGA
AA sequence Show only first row Show all	>Lus10027052 pacid=23151608 polypeptide=Lus10027052 locus=Lus10027052.g ID=Lus10027052.BGIv1.0 annot-version=v1.0 MSTTGVDVSDGIDYSDWLLSDDVYDTVGEAAQAAKKIVITLNFHLINESNKSNNSKKECRVYLYCSHGLARKFDGSDPPKWATKSKKCNCPFKLPKILNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027052 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	3.2	0.8264
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	3.5	0.7614
AT1G07645		ATDSI-1VOC	dessication-induced 1VOC super...		Lus10016574 [exp]	3.5	0.7192
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10005541 [exp]	3.6	0.6834
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	4.5	0.8184
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	4.7	0.6895
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	10.6	0.6543
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	12.1	0.7693
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	16.2	0.5432
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	19.4	0.6627

Compare expression of checked genes

Lus10027052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.