Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003025 [exp] 56 / 3e-08 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10017803 [exp] 47 / 1e-05 ND / Lus10042979 [exp] 44 / 0.0001 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023787 [exp] 43 / 0.0003 ND 44 / 3e-04 Lus10023767 [exp] 42 / 0.0003 ND / Lus10016946 [exp] 41 / 0.001 ND / Lus10017802 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027053 pacid=23151548 polypeptide=Lus10027053 locus=Lus10027053.g ID=Lus10027053.BGIv1.0 annot-version=v1.0 ATGATGGTGTTTTCCTTCCTTCCAACTGATACAACTTCGCTTTGTTGTTCCCACGATTGCAACCCTCCCGCGAGGCATGACACACCTATACCGTCGGACC CGACTTATGTCTATCCTGTCCCGACCTATGAAAACACCTCTATTCCTTCACCTGACTCCCATCATGATCCTCCTCTTGAAAACAGGTGCGAAGAAAACAA AGGGAAAATCACCACAACCTCAACTTCGCCGCAAAACAATGCTTGCAAAAAAGAAATCTGCCAAGCACGTAACGCCTCCAAAAACTTCAAAGCCTCGTCG TTCCCGAAAATCTATTGTTGCATCTGCGGTCACTCCGTAATGCACTATACACTCGCTTTGGCACCTCACAAGGTGCTCACCCCATGCTCTCTAACACCGT TTCTTGGCTTCCTTAGGCGTGGGCTCCATAAGCAGACTGCTGGACAAACTTCTGATGATCCGCTAGCGGATGATCATGCTTCCCTGTTAGCTTTTCTGCG TAACAAAAAAAAAACTCCACAACATCAGCCTTCAGAGCTGTTAGATACCCCTATTTCTCCATCGATCGTCAAACTCCCTGTTACCAGTCCACCATCTGCA CTCTTTCTCAGGTCTGCTGCTTTACCGGTTGATGATGATGGTCCCCTGCCTACCCTTTTGCTCCAAACCAACCAGCCAAAACACAAGTTGCGGCTCCACC TCCATCATCCACTCCCACCATTTTCGATCATCCTCGGAACACCTGCTTATGATTCACCGTCTTCAATAAGGAGAAGATTAGCTCCACGCCAGTTGGTCCG AGTCAGCAACCTTCCGTTCACCGTCGCCCTGGCGCTCTTTCCACCTGGAGGCGCCTTTTTACACCATAAATGTAGGTTTCCCTTCAGCCTTAGCGTTTCC CATTTGTTGTCCTACCCATTTTGCTTCTACACCCTCACTTTGATTTCCCGTTCTTACATATTATCCAGGTCGTTCTCTGCCAGAGGTTGCTCTTTTGTGA ATTGCGCGCTTAGATGCGCCAGTTTTGATCGTCGTTCATGTTCTCCGACCCCTTGA
AA sequence Show only first row Show all	>Lus10027053 pacid=23151548 polypeptide=Lus10027053 locus=Lus10027053.g ID=Lus10027053.BGIv1.0 annot-version=v1.0 MMVFSFLPTDTTSLCCSHDCNPPARHDTPIPSDPTYVYPVPTYENTSIPSPDSHHDPPLENRCEENKGKITTTSTSPQNNACKKEICQARNASKNFKASS FPKIYCCICGHSVMHYTLALAPHKVLTPCSLTPFLGFLRRGLHKQTAGQTSDDPLADDHASLLAFLRNKKKTPQHQPSELLDTPISPSIVKLPVTSPPSA LFLRSAALPVDDDGPLPTLLLQTNQPKHKLRLHLHHPLPPFSIILGTPAYDSPSSIRRRLAPRQLVRVSNLPFTVALALFPPGGAFLHHKCRFPFSLSVS HLLSYPFCFYTLTLISRSYILSRSFSARGCSFVNCALRCASFDRRSCSPTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027053 [exp]	0	1
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	2.0	0.9331
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031778 [exp]	2.4	0.9378
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	2.6	0.9505
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	4.2	0.9454
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	8.8	0.8991
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	11.0	0.9196
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	11.6	0.9320
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	15.0	0.9100
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	15.7	0.8940
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	19.6	0.9129

Compare expression of checked genes

Lus10027053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.