Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 205 / 1e-61 Protein kinase superfamily protein (.1) AT1G51940 118 / 7e-29 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G69790 110 / 6e-27 Protein kinase superfamily protein (.1) AT2G02800 108 / 6e-26 Kin2, APK2B protein kinase 2B (.1.2) AT1G01540 106 / 5e-25 Protein kinase superfamily protein (.1.2) AT1G61430 106 / 1e-24 S-locus lectin protein kinase family protein (.1) AT3G55450 102 / 3e-24 PBL1 PBS1-like 1 (.1.2) AT5G35370 104 / 4e-24 S-locus lectin protein kinase family protein (.1) AT5G16900 104 / 5e-24 Leucine-rich repeat protein kinase family protein (.1) AT4G21390 104 / 5e-24 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011517 [exp] 281 / 4e-91 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10011518 [exp] 275 / 8e-89 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10016113 [exp] 191 / 1e-55 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10038716 [exp] 181 / 3e-52 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10037586 [exp] 138 / 1e-35 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 135 / 2e-34 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10021451 [exp] 117 / 6e-31 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10041680 [exp] 113 / 6e-27 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10022488 [exp] 111 / 2e-26 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009600 [exp] 211 / 3e-64 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.008G037501 [exp] 194 / 1e-57 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 185 / 2e-54 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 185 / 2e-54 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 128 / 3e-32 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.019G094600 [exp] 117 / 2e-28 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.005G128200 [exp] 112 / 5e-27 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.019G094200 [exp] 112 / 6e-27 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.014G156400 [exp] 111 / 1e-26 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G128300 [exp] 111 / 2e-26 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027054 pacid=23151529 polypeptide=Lus10027054 locus=Lus10027054.g ID=Lus10027054.BGIv1.0 annot-version=v1.0 ATGGCAGCACTCAACCAAGATGACAACCCCGACGACTCGGTCTTCGAGTCCCGTACTTTCCCTCAATATCGTCCCAGGCCTCGCCCAACCCAATCCCAGT ATGTTCCTGCAACTCCCAGAAACTATGGTACAAGCAGCGGCACACCTTCAAGTTCGTTTCGCTCCTCGTTGATATCAGGTTCTTCCTCCTCAGATTCCTC GTTTTTCTTCACCATCTCTTCTTCGTCCTCGTCCTCCAGCTCGCACTCGATCCAGATCCTCCAAACTCATTCCTACCGCACCACCTTCCGTGGCAGAGAA GCCATCGGGTTTCGTCGTATGCCCCCTCCCAACTTCAGCCGAGACGAGCTGAAACAATGCCTGTCACTCATTGGCACCATTCGTCATGCCAATGTTGTTA AGCTCATAGGAGCTTCGATGCCAGCCAAGGAGCAACCGTATGTGAACCTCGTTTACGGATTCATCAACTCACCCACACTATCTGATTGTTTGACCACTTC CGGAAATGATCTGCTCTCGAAGTGGGTGCCGAGAATGGAGGTCGCGTTGGGGGTGGCTCGTGGACTGGATTACATCCACAATAGGACAGGACTCAATGCA GTATTCGTTCACAACCGTATCAAGAGCGCCAACATAATCCTCGAATGTAGTTCGGAGGGTCAGCTCACTAGAGCAATGATCTGCAATTTCGGCCTCGCAC ATGCCAGTGGAGAGACTGGTGATCAGCAGCAATGGCAGCCATTGATGGAAGATGAAGAAGGGTATCCGTACATGTCACCTGAGCTTCTGAGGGAAGGGAT AGCCACACATGAATCAGATGTGTATGCCTTCGGGGTGCTGCTGTTAGAGCTGATTTCGGGTAAGGAACCGTTGACATACCGCTACGATGAGGCCAGCAAA GTCTACGTCCGAACATCTATCGTAGAGACTGCAAGGGCGATGTTTGAAGGCGAAGACGAGGAGGATGAAGCAGAAGAGAAGGTGAAATGTTGGGTGGACA TAAGGCTGAATAGGATATTCCCTGCGAATATTGCAATGAAGGCGATTCGTGTTGCTCTGCTATGCGTGGATGAGGATCCCAAATCACGCCCTGACATGGG TTTTGTAGAAGGCTTCATTTCTGAATGCAGAAGAAAGTCCGACAAGATCTTTTGA
AA sequence Show only first row Show all	>Lus10027054 pacid=23151529 polypeptide=Lus10027054 locus=Lus10027054.g ID=Lus10027054.BGIv1.0 annot-version=v1.0 MAALNQDDNPDDSVFESRTFPQYRPRPRPTQSQYVPATPRNYGTSSGTPSSSFRSSLISGSSSSDSSFFFTISSSSSSSSSHSIQILQTHSYRTTFRGRE AIGFRRMPPPNFSRDELKQCLSLIGTIRHANVVKLIGASMPAKEQPYVNLVYGFINSPTLSDCLTTSGNDLLSKWVPRMEVALGVARGLDYIHNRTGLNA VFVHNRIKSANIILECSSEGQLTRAMICNFGLAHASGETGDQQQWQPLMEDEEGYPYMSPELLREGIATHESDVYAFGVLLLELISGKEPLTYRYDEASK VYVRTSIVETARAMFEGEDEEDEAEEKVKCWVDIRLNRIFPANIAMKAIRVALLCVDEDPKSRPDMGFVEGFISECRRKSDKIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	1.7	0.9439
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	2.0	0.9381
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	2.8	0.9191
AT3G13130			unknown protein		Lus10012341 [exp]	3.0	0.9269
AT1G75860			unknown protein		Lus10034539 [exp]	3.2	0.9172
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	6.3	0.9006
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	6.9	0.9044
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	8.1	0.9127
					Lus10018552 [exp]	8.5	0.9021
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	8.8	0.9080

Compare expression of checked genes

Lus10027054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.