Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59760 516 / 0 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT2G43750 513 / 0 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 420 / 2e-147 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 401 / 5e-140 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 399 / 6e-139 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 391 / 8e-136 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 379 / 5e-131 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G03630 367 / 3e-125 CS26 cysteine synthase 26 (.1) AT3G61440 361 / 2e-123 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT1G55880 111 / 6e-27 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025589 [exp] 694 / 0 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10015947 [exp] 429 / 8e-151 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 427 / 4e-150 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 402 / 6e-140 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10020342 [exp] 372 / 2e-127 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10014765 [exp] 362 / 2e-123 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10009521 [exp] 348 / 1e-117 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 311 / 1e-104 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 293 / 5e-97 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127800 [exp] 539 / 0 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.008G153300 [exp] 437 / 4e-154 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 435 / 3e-153 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 432 / 5e-152 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 426 / 2e-149 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 410 / 2e-143 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 402 / 3e-140 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 400 / 2e-139 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.019G045800 [exp] 375 / 3e-128 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.005G048200 [exp] 372 / 3e-128 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10027056 pacid=23151511 polypeptide=Lus10027056 locus=Lus10027056.g ID=Lus10027056.BGIv1.0 annot-version=v1.0 ATGAATCGCTTGACTTCTTCCCTCTGCAAATCCCGCGCCGCACTCCTCCACCCATTCGGTTCCTTCCTCAAACACCACTCCTCCTCCTCCCCACTCGCTT CTTTCCCTCGCCGGACAATGGACCGTAGGTTCATCACCAATGGAACGCCTATCGTCTGCAAGGCCGTCTCCGTCCAGTCTCCCAAGACCGCCACTGAAGG CGCCCTCAACATCGCCGACGACGTCACCCAGTTGATTGGGAAAACTCCTATGGTGTACCTTAACAGTGTGGTCAAGGGTTCTGTGGCTAACATTGCTGCC AAGCTGGAGATTATGGAGCCTTGTTGTAGTGTCAAGGACAGGATCGGATTAAGTATGATTGTTGATGCTGAAAAGCAAGGACTTATAACACCTGGAAAGA GTGTTCTGGTTGAACCCACAAGCGGTAACACAGGCATCGGGCTTGCATTTATAGCGGCATCAAGAGGATATAAACTCATTTTGACCATGCCAGCGTCAAT GAGTATGGAAAGGAGGGTTCTTCTAAAAGCATTTGGAGCAGAACTTGTTCTAACTGAAGCACCAAAAGGTATGAATGGTGCAGTTCAGAAGGCTGAAGAA ATTGTGAAAAAGACTCCAAATGCCTACATGCTTCAACAATTTGACAATCCAGCAAATCCCAAGGTCCACTACGAGACTACTGGACCAGAAATCTGGCAAG ACACAAAGGGTAAAGTTGATATCCTTGTTGCAGGTATTGGCACCGGGGGAACCATTTCTGGTGTTGGTCGGTTCCTTAAAGAGAAAAACCCAAACATTCA GATAATTGGCGTGGAGCCTGTAGAAAGCAACATACTGTCTGGGGGAAAGCCTGGTCCTCACAAGATTCAAGGAATCGGAGCAGGTTTTGTACCAAAAAAT TTGGACAGAGATCTAGTTAATGAAGTCATTGAGGTATCTAGCAGTGAAGCTATTGAAACAGCAAAGCAAGTAGCACTACAAGAAGGCCTATTGGTGGGCA TATCTTCTGGTGCAGCTGCAGCTGCCGCGTTGACGGTTGGAAAAAGGCCAGAGAACGCAGGGAAATTGATTGCAGTTGTGTTTCCAAGCTTCGGCGAAAG ATATCTGTCGACGGATCTGTTCTTGTCGATTCGACAAGAAGTCGAGAAACTTCAACCCGAGCAGTGA
AA sequence Show only first row Show all	>Lus10027056 pacid=23151511 polypeptide=Lus10027056 locus=Lus10027056.g ID=Lus10027056.BGIv1.0 annot-version=v1.0 MNRLTSSLCKSRAALLHPFGSFLKHHSSSSPLASFPRRTMDRRFITNGTPIVCKAVSVQSPKTATEGALNIADDVTQLIGKTPMVYLNSVVKGSVANIAA KLEIMEPCCSVKDRIGLSMIVDAEKQGLITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTEAPKGMNGAVQKAEE IVKKTPNAYMLQQFDNPANPKVHYETTGPEIWQDTKGKVDILVAGIGTGGTISGVGRFLKEKNPNIQIIGVEPVESNILSGGKPGPHKIQGIGAGFVPKN LDRDLVNEVIEVSSSEAIETAKQVALQEGLLVGISSGAAAAAALTVGKRPENAGKLIAVVFPSFGERYLSTDLFLSIRQEVEKLQPEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	1.4	0.8927
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	2.2	0.8769
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	2.8	0.8925
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	2.8	0.8589
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	3.5	0.8869
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	4.2	0.8687
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	7.7	0.8420
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	8.5	0.8284
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	9.5	0.8628
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	10.2	0.8773

Compare expression of checked genes

Lus10027056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.