Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 49 / 4e-08 Protein of unknown function (DUF1278) (.1) AT3G03272 48 / 6e-08 Protein of unknown function (DUF1278) (.1) AT5G17340 45 / 2e-06 Putative membrane lipoprotein (.1) AT2G21750 38 / 0.0006 Protein of unknown function (DUF1278) (.1) AT5G53742 37 / 0.0006 Protein of unknown function (DUF1278) (.1) AT4G39340 37 / 0.0008 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025591 [exp] 183 / 1e-60 AT1G76750 48 / 6e-08 Protein of unknown function (DUF1278) (.1) Lus10004598 [exp] 45 / 1e-06 AT1G76750 131 / 2e-39 Protein of unknown function (DUF1278) (.1) Lus10004548 [exp] 44 / 7e-06 AT1G76750 130 / 4e-39 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306600 [exp] 46 / 8e-07 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 45 / 1e-06 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 41 / 4e-05 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1) Potri.009G077000 [exp] 38 / 0.0008 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10027057 pacid=23151568 polypeptide=Lus10027057 locus=Lus10027057.g ID=Lus10027057.BGIv1.0 annot-version=v1.0 ATGGCGAATCAGAACCTTTCCCTCCTACGCATACATACACTCCTCGTCATCCTCCTCGGCTTCCTCTTCCTGCCAGCGTGGCAGCAACAGCACCCAGCTA AGGCTGCTCAGCAGCAGTATCCTGCGCCGGCGGCGTATTACCCACAATTTCCGACAGCCCGTCCGGCGCTTTGGGACCCGTACGTGTACGGGCAGTGCGT GGGGTCGTTTATCGCGGAGGAATCTTGCACAGGGGAGATCATGTCGTCGTTCTGGACCGGACGGGTTTACCTGGCGCCCGGTTGCTGCGACTCAGTCCGC CAGGTCAGCGACGAGTGCATCCCGACGGCGTTTTCCTTGCTGGCGAATCCTTTCTTTGGATACGCTCTGAAAGGTTACTGTGTAACTCGGCCTTGGATCC ATTCGCTGCCTTGA
AA sequence Show only first row Show all	>Lus10027057 pacid=23151568 polypeptide=Lus10027057 locus=Lus10027057.g ID=Lus10027057.BGIv1.0 annot-version=v1.0 MANQNLSLLRIHTLLVILLGFLFLPAWQQQHPAKAAQQQYPAPAAYYPQFPTARPALWDPYVYGQCVGSFIAEESCTGEIMSSFWTGRVYLAPGCCDSVR QVSDECIPTAFSLLANPFFGYALKGYCVTRPWIHSLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	0	1
					Lus10037427 [exp]	1.0	0.7990
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	2.8	0.7559
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Lus10031357 [exp]	8.8	0.6453
					Lus10007681 [exp]	12.6	0.7101
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	13.7	0.7268
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	14.0	0.7522
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	14.5	0.6985
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	16.5	0.7531
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	18.3	0.7426
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	20.7	0.6531

Compare expression of checked genes

Lus10027057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.