Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59690 337 / 1e-109 IQD13 IQ-domain 13 (.1) AT2G43680 310 / 1e-97 IQD14 IQ-domain 14 (.1.2.3) AT3G52290 123 / 2e-30 IQD3 IQ-domain 3 (.1) AT5G03040 116 / 1e-27 IQD2 IQ-domain 2 (.1.2.3) AT3G22190 99 / 5e-22 IQD5 IQ-domain 5 (.1.2) AT2G26410 96 / 1e-20 IQD4 IQ-domain 4 (.1) AT5G13460 94 / 2e-20 IQD11 IQ-domain 11 (.1) AT2G26180 92 / 8e-20 IQD6 IQ-domain 6 (.1) AT1G01110 83 / 1e-16 IQD18 IQ-domain 18 (.1.2) AT2G33990 78 / 6e-16 IQD9 IQ-domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025593 [exp] 846 / 0 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10036508 [exp] 115 / 3e-27 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 112 / 2e-26 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 108 / 3e-25 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 109 / 4e-25 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 97 / 3e-21 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10013362 [exp] 96 / 9e-21 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 90 / 6e-19 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10005315 [exp] 86 / 1e-17 AT5G13460 235 / 7e-73 IQ-domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127200 [exp] 537 / 0 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.019G095700 [exp] 515 / 4e-179 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.006G131100 [exp] 124 / 2e-30 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 122 / 1e-29 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 110 / 6e-26 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.012G022500 [exp] 104 / 1e-23 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.010G218100 [exp] 102 / 4e-23 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G021000 [exp] 100 / 2e-22 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.009G015800 [exp] 98 / 1e-21 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 98 / 1e-21 AT2G26180 386 / 1e-131 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10027059 pacid=23151528 polypeptide=Lus10027059 locus=Lus10027059.g ID=Lus10027059.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAGGAAGTTGGTTTTCTGCAATCAAGAGGGTCTTCTTACCCAATTCCAAGGATAAAGTAGCTAATGAATCTACAGATAAGAAGAGCAGTA AAGAGAAGAAGAAGAAAGGTTTAGGGAAGTTCAGGCAAGGAGAGAGCAGTTCATTCATTCCATTGTTTAGAGAACCAAGCAGCATTGAGAAGATCTTGGA TGAGGCAGAAAGAGAGCACAAACTAACTTTCAGGCCACCCGGACCGCCTCCTGATCATGATCAACCAAGAACCCCTACTTTCGTGCCTCCCTCGCGAATT TCAGCCTCTCCTCGCGTTCCCTCGCTAAGAGTTAGCTCTCCTAGGCCAGCTTCTCCAAGGGCTGCCTCGCCTAGACTTGCCGCGTCTCCAAGAGCTTCTT CACCTAGATCTGCCTCGACTTCAACTAGAGCAACTCCATCGAATAATGTTGAGCGTCAAAGACAGAATTTTTACAGACCGGAACCAACTGCTAGGAACCA GAATGCTTCTGCTACCAAGATCCAAGCAGTCTACCGAGGCTACGTTGCAAGAAGGAGCTTTAGAGCTCTGAAGGGTCTAGTGAGACTTCAGGGAGTGATC AGAGGGCAAAACGTGAAGCGCCAGACGATGAACGCGCTGAAGTACATGCAGCTCATGGTACGCGTTCAGTCTCAGATTCAGTCGCGGAGGATCCAGATGC TGGAGAGCCAAGCTCGCCTACATAAGAACGATAAAGATCTCGAAAGCAATTTGGGGAAATGGAGCCAAGCTTCGGAAGGCCAAAACGACCATTGGGATGA CAGTGTGCTAACGAAAGAAGAGATTGAGGCAAGAACACGTAGCAAGATCGATGCTGCTATCAAGAGAGAAAGAGCAATGGCCTATGCATATTCCCACCAG CTGTGGAAGGCCAGTCCGAAATCGACACAACTATCTCTAACCGACATGCGATCCAACGGATTCCCATGGTGGTGGAACTGGCTAGAGCGTCCGTTCCCTG CAGGATCAAACAACCACGAAAGCCAACCTGCAGCAACAAAAACCTTCCAACTCACTCCGACAAGGCCAGCATCAGAAATTAAGCCTAATACTCCAAAGCT CTTCCCATCGAGTGACTTCCACAACAAGCAATTCGGGTACGATGGCTTGTTGGACACTCCAACACCGAGGTCCACAAGGCCCACCGCAGCAGCATTCCTA TCGAGACAGGCGCGAACTCCACAAGCTCACAACAGCTTATCCAAGTACTCGAGAGCACGAGGAGGCGGGAATGACTCGCCATTCCCAATGAAAGACGACG ATAGCTTGACCAGCTGCCCGCCATTCTCGGTTCCCAACTACATGAACCCGACAATGTCAGCAAAGGCAAAGGCGAGGGCGAACAGCAATCCGAGGGAGAG GATGGCTACTCCGGGGACACCGGGCAGCGAGAAGAGGAGATCGTCGTTTCCTATGGGGCAGGGGATTGGTTCATTCAAGTGGAATGCTGGGAGCTTGTTC AATACTTCCTCTTCGAACAAGGGGGGTTCGGGTTCGAATTCGAACTCGCCGAGGGTGATACCAACGCACCAGCAGCAGGGAGTTGAGTCTGTTGGGAATC TCAGTGTTGATTCAACTGTTTCCATGCCTGCTGCTATTGGAAGAAGACCATTTAACAGGTTTGTGTGA
AA sequence Show only first row Show all	>Lus10027059 pacid=23151528 polypeptide=Lus10027059 locus=Lus10027059.g ID=Lus10027059.BGIv1.0 annot-version=v1.0 MGKKGSWFSAIKRVFLPNSKDKVANESTDKKSSKEKKKKGLGKFRQGESSSFIPLFREPSSIEKILDEAEREHKLTFRPPGPPPDHDQPRTPTFVPPSRI SASPRVPSLRVSSPRPASPRAASPRLAASPRASSPRSASTSTRATPSNNVERQRQNFYRPEPTARNQNASATKIQAVYRGYVARRSFRALKGLVRLQGVI RGQNVKRQTMNALKYMQLMVRVQSQIQSRRIQMLESQARLHKNDKDLESNLGKWSQASEGQNDHWDDSVLTKEEIEARTRSKIDAAIKRERAMAYAYSHQ LWKASPKSTQLSLTDMRSNGFPWWWNWLERPFPAGSNNHESQPAATKTFQLTPTRPASEIKPNTPKLFPSSDFHNKQFGYDGLLDTPTPRSTRPTAAAFL SRQARTPQAHNSLSKYSRARGGGNDSPFPMKDDDSLTSCPPFSVPNYMNPTMSAKAKARANSNPRERMATPGTPGSEKRRSSFPMGQGIGSFKWNAGSLF NTSSSNKGGSGSNSNSPRVIPTHQQQGVESVGNLSVDSTVSMPAAIGRRPFNRFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	0	1
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	1.0	0.9875
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	2.4	0.9755
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	2.4	0.9638
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	4.0	0.9563
AT1G61100			disease resistance protein (TI...		Lus10032661 [exp]	4.9	0.9608
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	5.5	0.9668
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	7.9	0.9734
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	8.7	0.9296
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	9.0	0.9621
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	9.8	0.9704

Compare expression of checked genes

Lus10027059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.