Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59680 91 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025594 [exp] 259 / 8e-89 AT3G59680 140 / 4e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G112300 [exp] 119 / 1e-33 AT3G59680 157 / 3e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027060 pacid=23151522 polypeptide=Lus10027060 locus=Lus10027060.g ID=Lus10027060.BGIv1.0 annot-version=v1.0 ATGGCTTCTCATTGGAGATCCATCCCCAAGCCTCCTACACAGGTTACTTCTTCCCCAAGATTGTGGAGATTCCCAACCCCAAAATCATCATCTAAAAGAA TCCCACCTCATACCAACAACCCTAATGACAATAACCCTAGCAAAGGCACTAATAACAAGCTAAGAAAGTGCACATCCATGAGGGTCGCGACATCATTCAC TAGGGTTTGTCTCTGTGCGCCAATCTCCTCGTACAACGAGGTTTTTGGGGCAGAGTTCCCACCGAGAAGAAGCTACAGTTATCCCAGGTCCTCATCATCC AAAGGGTTACTTGTGTCCCAAGAAAGGTTGGTGTCGTCCCCTCCTAATAATTATAATATTGTTCCAGCGAGGCTTAGCATGGAAGGTGGTATTAGGAGGC CGGTTTTCCGAGGGAAGTCGCTCAGGGATGATGTGTTGATGAGGAGATTTGTGCTTGAGGAAGAAGCAATGATGGAGGTTAGGAGAAGGAACAATCAAAT GGAGATTATTAGGAGGAGGAGTAGTATGGTTATGAGGAGGAAGAAGCTTGGTCCTAGCCGTTTGAGCAAATTGGTGATTGATGAGGTGGACGATGAAGAA AGAAATTGA
AA sequence Show only first row Show all	>Lus10027060 pacid=23151522 polypeptide=Lus10027060 locus=Lus10027060.g ID=Lus10027060.BGIv1.0 annot-version=v1.0 MASHWRSIPKPPTQVTSSPRLWRFPTPKSSSKRIPPHTNNPNDNNPSKGTNNKLRKCTSMRVATSFTRVCLCAPISSYNEVFGAEFPPRRSYSYPRSSSS KGLLVSQERLVSSPPNNYNIVPARLSMEGGIRRPVFRGKSLRDDVLMRRFVLEEEAMMEVRRRNNQMEIIRRRSSMVMRRKKLGPSRLSKLVIDEVDDEE RN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59680			unknown protein		Lus10027060 [exp]	0	1
					Lus10039390 [exp]	4.2	0.7550
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	10.2	0.7327
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	14.6	0.7220
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	15.0	0.7096
					Lus10006631 [exp]	17.2	0.6959
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	19.1	0.6936
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	20.2	0.7056
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	20.8	0.6910
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	23.7	0.6786
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	24.0	0.7171

Compare expression of checked genes

Lus10027060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.