Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31810 681 / 0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3) AT5G16290 610 / 0 VAT1 VALINE-TOLERANT 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025595 [exp] 824 / 0 AT2G31810 701 / 0.0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G142300 [exp] 688 / 0 AT2G31810 668 / 0.0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3) Potri.008G078800 [exp] 635 / 0 AT5G16290 664 / 0.0 VALINE-TOLERANT 1 (.1.2) Potri.010G178200 [exp] 626 / 0 AT5G16290 652 / 0.0 VALINE-TOLERANT 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF10369 [flax] [poplar] ALS_ss_C Small subunit of acetolactate synthase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10027061 pacid=23151623 polypeptide=Lus10027061 locus=Lus10027061.g ID=Lus10027061.BGIv1.0 annot-version=v1.0 ATGGCGCCCATTTCTTCAATCGCCTCCGCTCCTTTCCATTCCCAGCTTCTTCCCGCCTCCATTTCCACCTCTTCACCTTCCATCGCTTTCTTATTCTCCA AGCCTTCTTCTCCTTCTACCCTCTCCACTCCATTCAACACTCGCCGGAACAACAACTCTCTGGTTGTATCCGCCGTCAACTCCTCCGATGCCGCTGCTCT ATCCTCCGCCTCCCCTGCCCCCTCTCCGATTTCCAGGGTGAGGCGCCACACAATCTCTGTCTTCGTTGGCGATGAGAGCGGAATGATTAACCGCATCGCC GGCGTGTTCGCCAGGAGAGGCTATAACATTGAGTCCCTTGCCGTTGGTTTGAACAAGGACAAGGCGCTCTTCACCATCGTTGTTTCGGGTACCGATAGGG TTCTGAAACAGGTGGTGGAGCAGCTTCAGAAACTCGTCAATGTTCTCAAGGTTGAAGACCTCTCCAGTGAGCCTCAGGTGGAGCGAGAACTAATGCTTAT CAAAGTGAAAGGAGACACTGAGAATCGTGCTGAGATCAAGTGGTTGGTCGACATATTTAGGGGGAAAATTGTTGATATCTCAGAGCACTCTGTAACAATT GAGGTGACCGGAGACCCAGGGAAAATGGTTGCTGTTCAGAGAAATCTAAGCAAGTTTGGAATCAGAGAAATTGCCAGAACTGGCAAGATTGCATTGAGAA GAGAAAAACTGGGTGCTACTGCTCCCTTCTGGCGATTCTCTGCCTCTTCTTATCCCGATCTTGGAGAAAATGGGCCCACCAATGGACTTGCAGCTGATAA ACAGAGGGCGGTTATCAATGAAACTGATGCATCTACAGGGGGAGATGTTTATCCTACGGAGCCATCTGATGTATTTCCATTCCACCACGTTCTTGATGCG CATTGGGGTGTTCTGAATGAAGAAGATACCACTGGTCTTCGGTCCCACACCTTGTCCATGCTTGTAAATGATGTCCCTGGAGTTCTCAACCTTGTTACTG GTGTTTTCTCTCGACGAGGCTATAACATTCAGAGTTTGGCAGTTGGCCATTCCGAGAAGGAGGGTGTCTCTAGGATTACAACTGTGGTACCTGCTACGGA TGAATCAGTGAGCAAATTGGTACAGCAACTGTACAAGTTAGTAGACCTTCATGAGGTGAAGGATCTCACCGCATTTCCATTTGCAGAACGGGAACTAATG TTGATAAAGATTGCGGTGAATGCAGCTGCCCGACGTGACGTTCTTGATATAGCTACCATTTTCAGGGCAAAAGCAGTTGATGTATCTGACCACACTGTAA CCCTAGAGCTGACTGGGGATTTCGACAAAATGGTTGCACTTCAGAGATTGTTGGAACCCTATGGCATCTGCGAGGTTGCGAGAACTGGAAGATTAGCTAT GGTTCGCGAGTCGGGCGTGGATTCCAAGTATCTCCGCGGATACTCGCTTCCTATATAG
AA sequence Show only first row Show all	>Lus10027061 pacid=23151623 polypeptide=Lus10027061 locus=Lus10027061.g ID=Lus10027061.BGIv1.0 annot-version=v1.0 MAPISSIASAPFHSQLLPASISTSSPSIAFLFSKPSSPSTLSTPFNTRRNNNSLVVSAVNSSDAAALSSASPAPSPISRVRRHTISVFVGDESGMINRIA GVFARRGYNIESLAVGLNKDKALFTIVVSGTDRVLKQVVEQLQKLVNVLKVEDLSSEPQVERELMLIKVKGDTENRAEIKWLVDIFRGKIVDISEHSVTI EVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGATAPFWRFSASSYPDLGENGPTNGLAADKQRAVINETDASTGGDVYPTEPSDVFPFHHVLDA HWGVLNEEDTTGLRSHTLSMLVNDVPGVLNLVTGVFSRRGYNIQSLAVGHSEKEGVSRITTVVPATDESVSKLVQQLYKLVDLHEVKDLTAFPFAERELM LIKIAVNAAARRDVLDIATIFRAKAVDVSDHTVTLELTGDFDKMVALQRLLEPYGICEVARTGRLAMVRESGVDSKYLRGYSLPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	0	1
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	2.4	0.8104
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	4.2	0.7726
AT4G28310			unknown protein		Lus10033688 [exp]	4.6	0.8008
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	5.7	0.7921
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	7.7	0.8131
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	7.7	0.7480
AT3G27520			unknown protein		Lus10022283 [exp]	12.0	0.7535
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	25.9	0.7437
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	25.9	0.7605
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	35.6	0.7494

Compare expression of checked genes

Lus10027061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.