Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31770 135 / 9e-37 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 132 / 3e-36 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 129 / 1e-34 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G52310 116 / 6e-30 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT5G06530 110 / 6e-28 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G71960 102 / 4e-25 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G13220 102 / 5e-25 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G37360 87 / 6e-20 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT5G13580 86 / 3e-19 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55100 83 / 2e-18 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025596 [exp] 239 / 2e-75 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 195 / 7e-59 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 164 / 3e-47 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 136 / 4e-38 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 137 / 3e-37 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 133 / 4e-36 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 131 / 2e-35 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 130 / 5e-35 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10033314 [exp] 120 / 2e-31 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404000 [exp] 139 / 2e-38 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 137 / 2e-37 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.011G123200 [exp] 135 / 7e-37 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 133 / 6e-36 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 133 / 6e-36 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.006G199500 [exp] 112 / 2e-28 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.016G065900 [exp] 106 / 1e-26 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.013G111900 [exp] 106 / 2e-26 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 105 / 2e-26 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.001G370600 [exp] 105 / 3e-26 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10027062 pacid=23151539 polypeptide=Lus10027062 locus=Lus10027062.g ID=Lus10027062.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATCACAGTCACAGTGGCAGGGGGGGGACATCAGAGGGGTTCAAGGTAGCCCAACCCCACGTCACCCCCCAGTGCGACAAGAATATCTCGA TCGACGACATTGTCTACAAAGTCAAGCTGCCGCCGCCATCGAAATCCTCAAACTGGCCGGCTTACAAAAAATCATCAGCCAAATCAGAAGAAGAAAAGAC AATCCTTAATGGCGTGTCGGGTACAGTGTACCCAGGCGAAATGCTGGCAATGCTAGGCCCATCTGGAAGCGGCAAAACAACCCTCCTAACCGCACTCGGC GGAAAATTCGGAGGCGGCGGCAATAACGGAAAACTAAACGGAACCGTCACATATAACGGAGCTCCGTTCTCAAGCCAAATCAGACGGACGACGGGGTTCG TAACTCAAGACGATGTCCTCTACCCTCAGTTAACGGTAACGGAGACCTTAGTCTACACGGCCCTCCTCCGTCTACCAAACTCGCTGACTAGGAAAGAGAA AGTGGCACACGCGGAAGGCAGAGGGAGCGTGATGGGTGGGGAGAATCTGAGAGGAATCTCCGGCGGGGAGAGGAAGCGGGTTAGTATCGGGCAGGTTTCT GTCTGGAATGTGTGA
AA sequence Show only first row Show all	>Lus10027062 pacid=23151539 polypeptide=Lus10027062 locus=Lus10027062.g ID=Lus10027062.BGIv1.0 annot-version=v1.0 MEEDHSHSGRGGTSEGFKVAQPHVTPQCDKNISIDDIVYKVKLPPPSKSSNWPAYKKSSAKSEEEKTILNGVSGTVYPGEMLAMLGPSGSGKTTLLTALG GKFGGGGNNGKLNGTVTYNGAPFSSQIRRTTGFVTQDDVLYPQLTVTETLVYTALLRLPNSLTRKEKVAHAEGRGSVMGGENLRGISGGERKRVSIGQVS VWNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	0	1
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	2.0	0.8450
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	3.5	0.8413
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	5.3	0.8237
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10040354 [exp]	6.6	0.7649
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	10.8	0.7471
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042933 [exp]	10.9	0.8529
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041614 [exp]	20.8	0.7323
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	42.1	0.7158
					Lus10008920 [exp]	44.2	0.7344
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	45.1	0.7949

Compare expression of checked genes

Lus10027062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.