Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05710 174 / 4e-57 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 159 / 4e-51 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 118 / 2e-33 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 108 / 2e-28 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 103 / 3e-27 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G20100 96 / 2e-24 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G49830 95 / 2e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 94 / 3e-23 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 91 / 3e-22 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 87 / 1e-20 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025599 [exp] 285 / 4e-101 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 122 / 1e-34 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041649 [exp] 119 / 1e-33 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 119 / 3e-33 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 119 / 4e-33 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 110 / 3e-29 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024071 [exp] 102 / 1e-28 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 102 / 2e-26 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010638 [exp] 100 / 2e-25 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G112000 [exp] 209 / 4e-71 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.013G126800 [exp] 203 / 2e-68 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G094300 [exp] 121 / 1e-34 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 117 / 4e-33 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 117 / 9e-32 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 115 / 6e-31 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G185900 [exp] 110 / 3e-30 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 109 / 1e-29 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 109 / 6e-29 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 107 / 5e-28 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027064 pacid=23151563 polypeptide=Lus10027064 locus=Lus10027064.g ID=Lus10027064.BGIv1.0 annot-version=v1.0 ATGATGGAAAACAAAAGAAGTCCTTGCTTTCTTGACCAAGGGAATATCACTTCACTATCAACCAAAAGGCACAAGGCTGACCCTTCTGTCCCAATGAAGG ACCGTAAAGAGAAGTTTGGTGAAAGAATTGTACTTCTCCAGCAGCTTGTTTCGCCATATGGAAAGACAGATACTGCATCAGTCCTTTTGGAGGCGATGGA ATACATTCATTTCCTTCATGACCAAGTTAAGGTGTTGAGTGCCCCATATCTGCAAACCACACCACCACCTCGTATGCAGGGATTGGATGAATACAGTCTA AGAAGCAGGGGTCTCTGCGTCGTACCGGTGTGTTTAACAGCAGGAGTTGCTAACAGCAATGGTGCAGATCTTTGGGCACCAACCAAGACCACCAACCCTA TTTCACAACTGCACTGA
AA sequence Show only first row Show all	>Lus10027064 pacid=23151563 polypeptide=Lus10027064 locus=Lus10027064.g ID=Lus10027064.BGIv1.0 annot-version=v1.0 MMENKRSPCFLDQGNITSLSTKRHKADPSVPMKDRKEKFGERIVLLQQLVSPYGKTDTASVLLEAMEYIHFLHDQVKVLSAPYLQTTPPPRMQGLDEYSL RSRGLCVVPVCLTAGVANSNGADLWAPTKTTNPISQLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	0	1
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10025599 [exp]	1.0	0.9332
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	9.4	0.8389
					Lus10024338 [exp]	14.1	0.7883
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	17.2	0.7780
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	17.9	0.7216
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	19.1	0.7949
					Lus10021186 [exp]	22.3	0.7493
AT2G36650			unknown protein		Lus10023883 [exp]	24.1	0.8363
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	25.4	0.7895
AT1G65820			microsomal glutathione s-trans...		Lus10007373 [exp]	25.8	0.7296

Compare expression of checked genes

Lus10027064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.