Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65260 301 / 1e-101 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025601 [exp] 445 / 3e-158 AT1G65260 398 / 1e-139 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123600 [exp] 343 / 5e-118 AT1G65260 424 / 1e-149 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1) Potri.016G099400 [exp] 342 / 1e-117 AT1G65260 390 / 4e-136 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF04012 [flax] [poplar] PspA_IM30 PspA/IM30 family
Representative CDS sequence Show only first row Show all	>Lus10027068 pacid=23151585 polypeptide=Lus10027068 locus=Lus10027068.g ID=Lus10027068.BGIv1.0 annot-version=v1.0 ATGGCGCTGAACTCACAGGCGATTGCTGGATTGACCTTGCACTTACCATCTCCTGCTTCAACTTCTTCGACTTCCTCGAGTAACACTCTCTGTATGGTGA AGCGCCCGCCTCTCTGCTCGTCCTTCTTAAATGGCGGAGCTCTAAAGATGGATAGGATACGGAGTCCTGTTGGTTATTCACGTCGTATGAGGCAAGGCAG AGGAGCTCTAGTTATTCGTATGAATCTCTTTGAACGGTTTGCTAGAGTTGTGAAGTCATATGGAAATGCAATCTTGAGTTCGTTTGAAGACCCGGAGAAG ATTTTAGATCAAGCGGTGCTTGAAATGAATGACGACTTGACAAAGATGCGCCAAGCCACAGCACAGGTTTTGGCAACTCAAAAACGTATGGAAAATAAGT ACAAAGCTGCTCAACAAGCTTCTGAAGAGTGGTACCGGAAGGCGCAACTTGCTCTTGAAAAGGGAGAGGAAGATCTTGCACGCGAAGCACTCAAGCGGCG TAAATCTTATGCTGATAGTGCTAGCTCCTTAAAAGCAAACCTAGATCAACAGAAAAGTGTGGTTGACAATCTTATCTCTAACACTCGGCTCTTGGAGAGC AAGATACAAGAAGCAAAGTCGAAGAAGGACACTCTTAAAGCACGGGCTCAGAGTGCAAGAACGGCAACCAAAGTGAATGAGATGGTAGGAAATGTCAATA CCAGCAGTGCTCTTTCAGCTTTTGAAAAGATGGAGGAAAAAGGTATGGCATTCAACACGAACTTATCATGCATAACAGCATACTTTTATGTAACAGTAAG CAACATGAAGTTTGTCCTATATGTATCCATTAATATACCAGGAGACTGCTTTGTCCTTGTCCATATGGTACACCTGATCATTACCTGCTGTAGTTTCCCA CAAATCAATTTTCACTGTGATAGTCAGAGTGCTGCTTCAACTAGCGACTTGTCTGGAGTATGA
AA sequence Show only first row Show all	>Lus10027068 pacid=23151585 polypeptide=Lus10027068 locus=Lus10027068.g ID=Lus10027068.BGIv1.0 annot-version=v1.0 MALNSQAIAGLTLHLPSPASTSSTSSSNTLCMVKRPPLCSSFLNGGALKMDRIRSPVGYSRRMRQGRGALVIRMNLFERFARVVKSYGNAILSSFEDPEK ILDQAVLEMNDDLTKMRQATAQVLATQKRMENKYKAAQQASEEWYRKAQLALEKGEEDLAREALKRRKSYADSASSLKANLDQQKSVVDNLISNTRLLES KIQEAKSKKDTLKARAQSARTATKVNEMVGNVNTSSALSAFEKMEEKGMAFNTNLSCITAYFYVTVSNMKFVLYVSINIPGDCFVLVHMVHLIITCCSFP QINFHCDSQSAASTSDLSGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	0	1
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	1.4	0.9495
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	8.0	0.9163
AT2G26340			unknown protein		Lus10000477 [exp]	8.7	0.9468
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	10.2	0.9355
AT5G48830			unknown protein		Lus10038165 [exp]	11.2	0.9334
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	13.4	0.9448
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	15.2	0.9431
AT3G57810			Cysteine proteinases superfami...		Lus10020438 [exp]	15.5	0.9112
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	16.0	0.9401
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	18.8	0.9371

Compare expression of checked genes

Lus10027068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.