Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59820 808 / 0 LETM1-like protein (.1.2) AT1G65540 805 / 0 LETM1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025602 [exp] 1281 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G142000 [exp] 888 / 0 AT3G59820 840 / 0.0 LETM1-like protein (.1.2) Potri.010G178400 [exp] 863 / 0 AT1G65540 889 / 0.0 LETM1-like protein (.1) Potri.008G078600 [exp] 862 / 0 AT1G65540 915 / 0.0 LETM1-like protein (.1) Potri.001G187100 [exp] 60 / 6e-09 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [flax] [poplar] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Lus10027069 pacid=23151533 polypeptide=Lus10027069 locus=Lus10027069.g ID=Lus10027069.BGIv1.0 annot-version=v1.0 ATGGCTTCTAGAGCAATTGTGAGGAGGAACAAATGCGTTTTTGATTACTTCAGTTCTTCTGCTCGTTCCAGTTATGATCTCCGCAGTCTGCGGCTAGGAG TTCCAGGATTGGATTCTTGTGGCAATGGTTCTGATGCCAACTGTCAGTCTTCTGATCTTGCGAATGTGAAGGAACCAAATGATGCTGCAGCTAGAAAACT AGAAGTGTATGGTGTCTTGGGTGATGGGCACTTTAGGAATAGTTTCTATAGTAGGGCAGTTTTGGGCTCCAGAAATGTCAGAGCAGACTTCTTTCACCCG CTAAGATTGATGTCTACAGCTTCAGGAAATGCATCTACTGCCACCGCTAAACAGCCTGAGTTTGGAAATGATGATGACGGAAATGAAGAATCTGTAGCCA AAAAGAGAAAAGAAGTGTCTCCAGAAGACTGTGATGAAGCTGTTGAAGGCTTGAGTACTGCGAAGGCCAAAGCAAAAGCCAAAAAGTTACAAGAGTCTCA AAATGCTGTCAAATCGGTTTTACAGAAAACATGGGCTGTGCTTCTTGGAATCGGCCCTGCATTAAGAGCTGTAGCTGCTATGAGCAGGGAAGATTGGGCC AATAAACTTACACACTTCAAAAAGGAAATTGTCTCCACTTTGAAGCATTATTGGTTGGGTTTTAAACTGTTGGGAGCTGATGTAAGGATCAGTGTACGAT TGCTATTGAAACTTGCTGAAGGGAAGAGTCTGTCCAGAAGGGAGAGGCAACAGCTAACACGAACAACTGCAGACATTTTTCGTTTAGTTCCTTTCGCAGT TTTCATCATTGTTCCCTTCATGGAATTTCTGCTGCCTGTATTCCTGAAATTGTTCCCCAATATGCTGCCATCAACATTTCAGGACAAGATGAAAGAGCAG GAAGCATTGAAAAGGAAGCTAAACGCGAGGATAGAATATGCCAAGTTTCTTCAGGATACAGTAAAAGAAATGGCAAACGAAGTTCAAAACTCACGAAGTG GTGAAGCTAAGAGAACTGCAGAGGATCTTGATGAATTTTTGAACAAAGTTAGGAAAGGTTCTTCCGTTTCCAATGACGAGATTTTAAGCTTTGCCAAGCT ATTCAACGATGAGCTAACTTTAGATAATATCAGCAGGCCTCGGTTAGTCAGTATGTGCAAGTATATGGGGATCAGTCCTTTTGGAACTGATTCTTATCTT CGATTCATGCTCCGGAAAAGACTTCGAAGCATAAAAGCTGATGACAAGATGATCCAAGAAGAAGGCATTGAAACGCTTACAGAGGATGAACTTCGCGCAG AATGTAGAGAACGTGGAATGCTTGGGTTACTTTCAGTTGAAGAAATGAGGGAACAGCTCCGTGACTGGTTGGATCTCTCTCTCAATCACTCCGTCCCATC TTCTCTGTTAATCCTCTCAAGGGCTTTCACTGTGTCTGGAAGAGTGAAACCAGAGGAAGCTGTTCGTGCAACACTATCATCTCTTCCCGATGAAGTTGTG GATACTCTTGCCAGTACTGGTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAGAAGGAAGTTGGAGTTCTTACAGATGGAGGATGAACGTATCAAGGAAG AGGAAGAGAAAGAGGAAGAAGAACTTGCTAGGATTAAAGAACATAAAGCGAGCGAGGAGGAAGATGTGGCATTGAAAGAGATGACTACACCAACAGCAAG TGAAGCTCAAGAACGGGCCAGGGAACGAACGCTGGAGAAACAGGATGAGCTTTGTGAACTCAGTCGTGCATTGGCTGTTTTAGCTTCTGCATCATCAGTG AGTAGAGAACGTGAACAGTTTCTGAGACTTGTCAACAAGGAGATAGAGCTTTATAACAGCATGATAGATAGCGAAGGCATCGAGGATGAGAAGGCGGCGA TGAAGGCTTATAGAGCGGCTAAAGATGAAAGTTGGCGTTCAGCTGAAGTGGAAAAGCAAGAAGAAGAGGAAGAAGAAGCTGATGAAGTTTCTTCAGCACT TATCGACAGGGTTGACGCCATGCTCCAAAAGCTCGAGAAGGAGATTGACGACGTGGATGCTGAAATCGGGGACCGTTTCCGACTACTTGACAGGGATTAC GATGGGAAAGTGACACCAGACGAGGTGGCAGCAGCAGCTAACTATCTGAAGAACACACTTGGGAAAGAAGGCATTCAGGAACTCATTAGCAATCTTGCCA AAGACTCAGATGGGAAGATTCGGGTGGAAGACATAGTGAAATTGGGTAGTCGGTTGGAAGATGAGTCGGGTGAGGGTGAAGAGGAGGGTGACAAACGAGC CAAAAGAGCCAAGCCAGCCACGGTCACTGGAATTTTGGGTCACTGA
AA sequence Show only first row Show all	>Lus10027069 pacid=23151533 polypeptide=Lus10027069 locus=Lus10027069.g ID=Lus10027069.BGIv1.0 annot-version=v1.0 MASRAIVRRNKCVFDYFSSSARSSYDLRSLRLGVPGLDSCGNGSDANCQSSDLANVKEPNDAAARKLEVYGVLGDGHFRNSFYSRAVLGSRNVRADFFHP LRLMSTASGNASTATAKQPEFGNDDDGNEESVAKKRKEVSPEDCDEAVEGLSTAKAKAKAKKLQESQNAVKSVLQKTWAVLLGIGPALRAVAAMSREDWA NKLTHFKKEIVSTLKHYWLGFKLLGADVRISVRLLLKLAEGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQ EALKRKLNARIEYAKFLQDTVKEMANEVQNSRSGEAKRTAEDLDEFLNKVRKGSSVSNDEILSFAKLFNDELTLDNISRPRLVSMCKYMGISPFGTDSYL RFMLRKRLRSIKADDKMIQEEGIETLTEDELRAECRERGMLGLLSVEEMREQLRDWLDLSLNHSVPSSLLILSRAFTVSGRVKPEEAVRATLSSLPDEVV DTLASTGLPSEDSVSERRRKLEFLQMEDERIKEEEEKEEEELARIKEHKASEEEDVALKEMTTPTASEAQERARERTLEKQDELCELSRALAVLASASSV SREREQFLRLVNKEIELYNSMIDSEGIEDEKAAMKAYRAAKDESWRSAEVEKQEEEEEEADEVSSALIDRVDAMLQKLEKEIDDVDAEIGDRFRLLDRDY DGKVTPDEVAAAANYLKNTLGKEGIQELISNLAKDSDGKIRVEDIVKLGSRLEDESGEGEEEGDKRAKRAKPATVTGILGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	0	1
AT5G55200		MGE1	mitochondrial GrpE 1, Co-chape...		Lus10010247 [exp]	1.7	0.9486
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	2.6	0.9407
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	2.8	0.9420
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	5.3	0.9549
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	8.1	0.9411
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	8.4	0.9107
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	11.0	0.9395
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	11.2	0.9316
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	11.2	0.9400
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	11.3	0.9500

Compare expression of checked genes

Lus10027069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.