Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05400 230 / 6e-76 copper ion binding (.1.2) AT4G21140 189 / 7e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008331 [exp] 377 / 2e-133 AT4G05400 269 / 5e-91 copper ion binding (.1.2) Lus10035454 [exp] 149 / 3e-46 AT4G05400 109 / 4e-31 copper ion binding (.1.2) Lus10031070 [exp] 121 / 7e-35 AT4G05400 100 / 7e-27 copper ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098000 [exp] 298 / 8e-103 AT4G05400 273 / 6e-93 copper ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027072 pacid=23151515 polypeptide=Lus10027072 locus=Lus10027072.g ID=Lus10027072.BGIv1.0 annot-version=v1.0 ATGTTCCGGATCGCGAGAGCAGCGAAGCCTCTCGAATCTCTGACCCACCAATTCATCCAGCGATGTTCCGTCAGCGGCACAGCGAAAGGGAAAGCCAAGT TGAAAGACGGACCGAAGAAGAAGATGAAGGTCTCCACCAAGAAGGGCGGTAAAGGCAGTGCCGTCGATCTAGATCCTTCCGCCCGGCCAACTTCCCGTCA AGACGCGGAGAAGAACAAGCTATACGACCAGTGCATAAACGCCCCCACTCCGGTCCGGCACCTGAAGCCCAAGGAGTTGAAGCGGGAGGCGGAGAGACAG AAGCTAGGGTTGGAGAGCAAAGAGCGGCTTCGGGAGAAGGAGATTCTGAAGAAAGGCGGGAGGCAGGCGATGGGAGTTCCTGACGAGCCGTTGGTGATGG GAACTCCTGGATTCGACCTCATCTCGCTTGGATTGGTTGACGCCGATAAGATCCCGAAGTACGAGCTGACGGTGGAGGACGGGAGGAGGCTGGCGAAGGA ATACAGTAGGTTTTTGATGAGGAAGCACAGGGCAAGGCAGGCTGCGGAGACGAATCTGTTGAGGATGAAGAAGGAAGCGATCGAAGCGTTGCCGGATCAG CTAAAGATGGCCGCTCTTGTGCCGGACTTGACTCCGTTTCCTAAGGAGAGATTCATGGCCACGTTGACTCCTCCGATCGAGGGGTATATTGAGAAGGTTA AGGAGGCTGCAATGAGGAGTTCCGGTGCTCAGAAGATTAGATAA
AA sequence Show only first row Show all	>Lus10027072 pacid=23151515 polypeptide=Lus10027072 locus=Lus10027072.g ID=Lus10027072.BGIv1.0 annot-version=v1.0 MFRIARAAKPLESLTHQFIQRCSVSGTAKGKAKLKDGPKKKMKVSTKKGGKGSAVDLDPSARPTSRQDAEKNKLYDQCINAPTPVRHLKPKELKREAERQ KLGLESKERLREKEILKKGGRQAMGVPDEPLVMGTPGFDLISLGLVDADKIPKYELTVEDGRRLAKEYSRFLMRKHRARQAAETNLLRMKKEAIEALPDQ LKMAALVPDLTPFPKERFMATLTPPIEGYIEKVKEAAMRSSGAQKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	0	1
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	1.4	0.8390
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	2.0	0.8079
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	2.4	0.8196
AT1G71730			unknown protein		Lus10042772 [exp]	6.0	0.7750
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	7.7	0.7875
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10017675 [exp]	9.2	0.7987
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	9.5	0.7853
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	10.4	0.7944
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	10.7	0.7390
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	11.2	0.8011

Compare expression of checked genes

Lus10027072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.