Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43900 1323 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 1175 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT1G65580 1062 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 964 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 113 / 2e-25 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 111 / 8e-25 DNAse I-like superfamily protein (.1.2) AT2G01900 103 / 5e-23 DNAse I-like superfamily protein (.1) AT3G63240 103 / 1e-22 DNAse I-like superfamily protein (.1) AT5G65090 100 / 9e-22 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 100 / 2e-21 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008330 [exp] 1815 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10041607 [exp] 1030 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 571 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 291 / 3e-85 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 113 / 1e-25 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 110 / 2e-24 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028697 [exp] 109 / 6e-24 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 104 / 2e-22 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 101 / 2e-22 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177400 [exp] 1134 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 1025 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.007G145100 [exp] 1025 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 908 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.001G145900 [exp] 115 / 3e-26 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.012G041600 [exp] 110 / 4e-25 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.003G088300 [exp] 112 / 5e-25 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G101700 [exp] 106 / 1e-23 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 103 / 6e-23 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 102 / 2e-22 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10027073 pacid=23151593 polypeptide=Lus10027073 locus=Lus10027073.g ID=Lus10027073.BGIv1.0 annot-version=v1.0 ATGGACGCTGGGGACAACAAAATCGAAGAAGAAGACAAACAGGCGCTGGCCGGACTGAGCTCCGTCCCCCAACAGCACCGCGCCAAAGTCCATTCCTACA GCCAACAGCTCCGCGGCGGCGAGAAGCGGCACCGCCGGGTGCGCAAACACAGCCCCGAACACAGCCTCGACGACATCCCCTCCGGCGGCAGGCATTTCTC AAACTCCGCCTCCGATGACGATTTCGCCAATTACTCCCTCAATCCGGACGAAGACTCCGACGGATCCCTAGAGCTGAAGCCCTACAATCCTCTCACCGAA TTCGTCGCCTCCGCAACCCCGACCGGATCCGGATCTGTATCCAGTGGCAGTACAGGCGGAAGCACTGGCGGTAGCAGTCACGGCTCAGGCGGAGGAGGGA GTAATTCGGCTTCAGCCGCCTCCGGCAGCAGCGGAAGCGGGGGGTTCAAAAGGGCGGCGGGGGCGGGCGGGCGCTCCGGGGGGGGGGCCCGGGCGCATCC AGGGAGGCCGCCGTGCTTGGAGCTGAGGCCGCATCCATTGAGGGAGACGCAGGTGGGGAAGTTTCTGAGGAACATAGCATGTACCGAGACGCAGCTGTGG GCGGGTCAGGAGTGCGGGATCCGGTTCTGGAAGTTTGACCGAATCTACGAAGCTGGGGGTGGGTTAGGCGGGAAGGTGAGGAGAGGGGACGAGGATGCGG CGCCGTTTCAGGAGTCGGTGAATATTCCCCCGACGTTTTGCTTGATGGCGGACGCCGCGAACGGGTTAGTGTGGAGCGGGCACAAGGATGGTAAGATCCG GTCGTGGAAAACGGAGCAGAAAATTGATCACGAAGAAGGTGAAGATGCCGCTACTGCTACCGCTACGTCTCCTCAGCCTTTTAAGGAAGGGCTTTCTTGG CAGGCCCATAAAGGCCCAGTTCTCTCTATGGTCATGAGTTCCTACGGAGACTTATGGTCAGGATCAGAAGGAGGAGTGATAAAGATATGGCCATGGGAGA GCATCGAGAAATCCCTATCCCTAAAATCGGAAGAAAAGCGCATGGCAGCGCTGCTAGTAGAGAGATCAGCAATCGACCTAAGAAGCCAAGTCACCGTCAA CGGTGTCTGCAGCATCTCTTCCTCCGACATCAAATGTATACTCTCCGACAACGCCCGAGCCAAGCTCTGGTGCGCACAGTCCCTAACTTTCTCCCTCTGG GACGCCCGCACCAAGGAGCTCCTCCGCGTGTTCAACATCGAAGGCCAGACCGAAAACCGCATCGACGGCGGAGAAAAAGGCAACGACAAGGCCAACCAGC AGCAGCAACAACACAATTTACATCAACAGCAGCAATTACAGGACGGCGGAGGAGGAGGGGATCAGGACGTGGTGGTAGTGCCGGAGCCGGCGCCGGAGGG GAAGGGGAAAGGGAAATCGGGGTCGAATAAGAAGGAGAAGTCGCAGGGGTTTCTTCAGAGGTCGAGAAATGCGATCATGGGGGCGGCGGATGCGGTTAGG AGAGTGGCGACGAGGGGGACTAACGCGTTTGTTGAGGATGCGAAGAAGACGGAGGCGGTTGTGATGACGGCGGATGGGATGATTTGGAGCGGATGTACCA ATGGGCTGATTATGCAGTGGGATGGGAATGGGAATCGGGTTCAGGATTTTAATCTGATGGGTAACGTCTCTGTGCAGTGCTTCTGTACCTTTGGCACCCG GATCTTCGTCGGCTACGCCAGCGGGATTATCCAGGTGCTGGACCTGGAAGGACATCTGCTGGCTATGTGGACGGCGCACAGTAATCCGGTGCTGAAACTA GCCGTAGAGGAAGGCTACGTTTTCAGCTTAGCAAGCCACGGCGGGATTCGGGGATGGAGCACCACTTCGCCTGGCCCCGTCGACAGCATCTTGAGGTCCG AACTGGCCGCAAAAGAGCTCACTTACACCAGAAAGGATAGCTTCAGGGTCCTCATCGGCACCTGGAATGTGGGCCAAGGTAGGGCCTCTCAGGAGGCAAT GATGTGCTGGCTGGGATCCACTGCTGCCGATGTAGGGATCGTGGTGGTCGGCCTCCAGGAAGTCGAGATGGGTGCTGGTTTCCTCGCCATGTCTGCCGCC AAAGAAACTGTAGGACTGGAAGGGAGTGCACTTGGGCAGTGGTGGCTTGACAATATCGGTAAAGCTTTAGGGGAAGGATCCGTTTTTGAAAGAATGGGTT CCAGGCAACTGGCTGCATTGCTTGTCTCCGTCTGGGTAAGAAAGAACATGAGACAACATGTTGGAGATGTTGATGCTGGAGCAGTTGCTTGCGGGTTTGG ACGAGCAATTGGTAATAAGGGAGGGGTAGGGGTGAGAATAAGGGTACGAGACAGGATAATGTGCTTCGTGAACTGTCACTTGGCAGCACATTTGGAAGCA GTGAATAGAAGGAACGCAGATTTCGATCACATATATAGAAACATGGTGTTCGGGAAGCCTACCTCAAACGCTGCGGCTGGTGTCTCCTCCTCTACTCATA CCCTTAAGTCTGATAAAGCCTCCGGCGGAGGAGGCAGTGGCAGTGGCAGCGGCAACAGCGGTGGTGGTAGTAACTCTTCCGAGGACACAAAGCCAGAACT GTCTGATGCAGATATGGTTGTGTTCTTCGGTGATTTTAACTACCGACTCTTTGGTATTTCCTATGATGAGGCCAGGGACTTCGTTTCCCAGCGCTCCTTT GACTGGCTCCGTGAGCGCGATCAGCTCCGCGCTGAGATGAAAGCTGGCAAAGTTTTCCCTGCCATGCGCGAAGCCATCATCACTTTCCCCCCTACCTACA AATTCGAGAAGGGCCTCCCCGGTTTAGGAGGTTATGATTCTGGGGAGAAGAAACGTATTCCTGCCTGGTGTGACAGGGTTATCTACCGCGATACTCGGCC TAGTTCGGTTTCACCAACACAAATTGAATGCAACTTGGAGTGCCCTGTTGTCTCTGCAGTTATCCAGTACGAAGCTTGCATGGATGTGGTTGAGAGTGAC CATAAACCTGTGCGGTGCAAGTTCCACATCCAAGTTGCTCATACTGACAGATCAGTGAGGAGGCAAGAGTTCGGCGAGATTCTCAAGAACAACGAGAAGA TCCAGTCTCTGTTGCCGGAATCTCGCGTAGTTCAGGAATCTCGCGTAGTTCCAGATACCACTGTCAGCACAAACACCATTGTCCTCCAAAATCAGGACAC TTCTATTCTCAAGATCACCAACAAATCTGAAACGGACAAAGTTGTTTACAGGCTGTATTGTGAGGGCCAGGCCAATTTCAAGGATGAAGGAGACGAAGCT GAGTATCGTGCCAGAGGTTCCTATGGCTTCCCCCGATGGCTTGAGGTCACACCGGCAGTTGGTATTATCAGACCTGACAATAGTATGGACGTCGCAGTGC ACCATGAGGAATTTCACAGTCTAGAAGATTTAGTAGACGGCATCCCGCAGAACTGGTGGTGCGAAGACACCAGAGACAAGGAAGTGATCCTAGTCGTCGT TGTGCAAGGCAGTAACTCGACAGAGGCCACAACTCACCGGATCCAAGTTCGCCACTGCCTCTCCGCCAAAACACTTCGTGCAGACTCTAAATCAGGCTCT CGCAGAGGCCAGGCAGGTGGAGGAGGTCAAGCTCAAAGAAGCGACCTCAAACAAGATGCAGCAGATGATTCTCGACAAAAGTCTTGA
AA sequence Show only first row Show all	>Lus10027073 pacid=23151593 polypeptide=Lus10027073 locus=Lus10027073.g ID=Lus10027073.BGIv1.0 annot-version=v1.0 MDAGDNKIEEEDKQALAGLSSVPQQHRAKVHSYSQQLRGGEKRHRRVRKHSPEHSLDDIPSGGRHFSNSASDDDFANYSLNPDEDSDGSLELKPYNPLTE FVASATPTGSGSVSSGSTGGSTGGSSHGSGGGGSNSASAASGSSGSGGFKRAAGAGGRSGGGARAHPGRPPCLELRPHPLRETQVGKFLRNIACTETQLW AGQECGIRFWKFDRIYEAGGGLGGKVRRGDEDAAPFQESVNIPPTFCLMADAANGLVWSGHKDGKIRSWKTEQKIDHEEGEDAATATATSPQPFKEGLSW QAHKGPVLSMVMSSYGDLWSGSEGGVIKIWPWESIEKSLSLKSEEKRMAALLVERSAIDLRSQVTVNGVCSISSSDIKCILSDNARAKLWCAQSLTFSLW DARTKELLRVFNIEGQTENRIDGGEKGNDKANQQQQQHNLHQQQQLQDGGGGGDQDVVVVPEPAPEGKGKGKSGSNKKEKSQGFLQRSRNAIMGAADAVR RVATRGTNAFVEDAKKTEAVVMTADGMIWSGCTNGLIMQWDGNGNRVQDFNLMGNVSVQCFCTFGTRIFVGYASGIIQVLDLEGHLLAMWTAHSNPVLKL AVEEGYVFSLASHGGIRGWSTTSPGPVDSILRSELAAKELTYTRKDSFRVLIGTWNVGQGRASQEAMMCWLGSTAADVGIVVVGLQEVEMGAGFLAMSAA KETVGLEGSALGQWWLDNIGKALGEGSVFERMGSRQLAALLVSVWVRKNMRQHVGDVDAGAVACGFGRAIGNKGGVGVRIRVRDRIMCFVNCHLAAHLEA VNRRNADFDHIYRNMVFGKPTSNAAAGVSSSTHTLKSDKASGGGGSGSGSGNSGGGSNSSEDTKPELSDADMVVFFGDFNYRLFGISYDEARDFVSQRSF DWLRERDQLRAEMKAGKVFPAMREAIITFPPTYKFEKGLPGLGGYDSGEKKRIPAWCDRVIYRDTRPSSVSPTQIECNLECPVVSAVIQYEACMDVVESD HKPVRCKFHIQVAHTDRSVRRQEFGEILKNNEKIQSLLPESRVVQESRVVPDTTVSTNTIVLQNQDTSILKITNKSETDKVVYRLYCEGQANFKDEGDEA EYRARGSYGFPRWLEVTPAVGIIRPDNSMDVAVHHEEFHSLEDLVDGIPQNWWCEDTRDKEVILVVVVQGSNSTEATTHRIQVRHCLSAKTLRADSKSGS RRGQAGGGGQAQRSDLKQDAADDSRQKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	3.7	0.8140
					Lus10026124 [exp]	4.0	0.8137
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	5.1	0.7985
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	6.7	0.8190
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	9.4	0.8279
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	11.6	0.7651
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	14.4	0.7520
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10027907 [exp]	14.9	0.8337
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	16.1	0.7909
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	17.3	0.8000

Compare expression of checked genes

Lus10027073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.