Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31820 583 / 0 Ankyrin repeat family protein (.1) AT1G05640 556 / 0 Ankyrin repeat family protein (.1) AT1G07710 410 / 5e-140 Ankyrin repeat family protein (.1) AT5G60070 398 / 5e-135 ankyrin repeat family protein (.1) AT5G02620 354 / 3e-118 ATANK1, ANK1 ankyrin-like1 (.1) AT2G01680 283 / 2e-90 Ankyrin repeat family protein (.1) AT3G12360 276 / 4e-87 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 265 / 9e-83 Ankyrin repeat family protein (.1) AT5G54710 104 / 5e-24 Ankyrin repeat family protein (.1) AT1G10340 80 / 7e-16 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008329 [exp] 769 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 430 / 2e-147 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 426 / 5e-146 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 378 / 5e-127 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 347 / 1e-115 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 292 / 3e-93 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 290 / 5e-93 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 290 / 8e-93 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 278 / 4e-91 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006800 [exp] 624 / 0 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 588 / 0 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 409 / 1e-139 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 401 / 2e-136 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 392 / 4e-133 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 385 / 3e-130 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 381 / 1e-128 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 295 / 2e-95 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 293 / 2e-94 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 286 / 4e-91 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10027074 pacid=23151507 polypeptide=Lus10027074 locus=Lus10027074.g ID=Lus10027074.BGIv1.0 annot-version=v1.0 ATGACCACTGACTTGTCATGCACGACTGCCTTGCACACGGCCGCCTCTCAAGGACACATAGATGTGGTCAACCTCCTTTTGGAAACAGATTCGAATCTCG CAAAGATTGCACGGAATAACGGGAAAACAGTTCTTCATTCAGCTGCAAGAATGGGGCACTTGGAGGTTGTGCATTCCCTACTGATCAATGATCCAAGTTC CGGTTTCAGGACAGATAAGAAGGGACAGACTGCACTCCATATGGCTGTGAAAGGTCAAAATGTGGAAATCGTAATGGAATTGCTGAAGCCTGATCCTTCT GTTGCGAGTTTAGAAGATAGTAAAGGGAACACCGCATTGCATATCGCCACAGCGAAGTTGCGTACCCAGAATGTTAGATGTCTATTATCCGTTGAGGGCG TTAATGTCAATGCTATGAACAAGAGAGGGGAGACGCCATTGGACTTAGCAGAGAAACTATCAAACCTTGAACTTGTTTCTGTTCTGAAGGAGGCAGGGGC TAACAACTCAAAAGATCTCGTTAAGCCTTCAAACCCGGCTAAGCAACTTAAGCAGACTGTCAGTGACATAAAACACGATGTCCAATCTCAGCTCAAACAG ACGCGACAAACCGGGTTCAGGGTCCAGAAAATCGCCAAGAGGCTGAAAAAGCTCCATATAAGCGGCCTAAACAACGCTATAAACTCGGCGACAGTTGTTG CTGTACTTATTGCCACTGTTGCGTTCGCAGCTATTTTCACAGTTCCTGGCCAGTATGTTGAGCAGAAAGTCTCCGGTGTGTCGCTTGGGCAAGCCCATAT AGCAGACAACCCGGCTTTCCTGATATTTTTCGTGTTTGATAGCTTGGCATTGTTCATCTCTCTGGCAGTCGTCGTGGTGCAAACATCGGTTGTTGTGATC GAACAAAAGGCCAAACAGCAGCTTGTGTTTGTGATTAACAAACTTATGTGGCTGGCTTGCCTCTCCGTCTCGGTTTCCTTCATCTCCCTTAGCTACATTG TCGTCGGAAAGAGATCCCGGTGGCTTGCTATCTACACAACGAGTGTCGGTTCGGTGATTATGCTCACGACTATTGGATCCATGTGCTACTGTGTAGTGGT GCATAGGATGGAGGAGTCTAAATTGAGGAGCATAAGAAAAACCGAAAGCAGATCTCACTCCTATCCGAGGTCTCAGGCTTCCGATCAGGAGATATTAGAG GGTGAATATAAGAGGATGTATGCACTGTAG
AA sequence Show only first row Show all	>Lus10027074 pacid=23151507 polypeptide=Lus10027074 locus=Lus10027074.g ID=Lus10027074.BGIv1.0 annot-version=v1.0 MTTDLSCTTALHTAASQGHIDVVNLLLETDSNLAKIARNNGKTVLHSAARMGHLEVVHSLLINDPSSGFRTDKKGQTALHMAVKGQNVEIVMELLKPDPS VASLEDSKGNTALHIATAKLRTQNVRCLLSVEGVNVNAMNKRGETPLDLAEKLSNLELVSVLKEAGANNSKDLVKPSNPAKQLKQTVSDIKHDVQSQLKQ TRQTGFRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEQKVSGVSLGQAHIADNPAFLIFFVFDSLALFISLAVVVVQTSVVVI EQKAKQQLVFVINKLMWLACLSVSVSFISLSYIVVGKRSRWLAIYTTSVGSVIMLTTIGSMCYCVVVHRMEESKLRSIRKTESRSHSYPRSQASDQEILE GEYKRMYAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	0	1
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	1.4	0.8813
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	2.6	0.8401
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	3.0	0.8445
AT5G43150			unknown protein		Lus10041628 [exp]	4.2	0.8410
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	5.3	0.8423
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	6.2	0.8688
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023699 [exp]	6.7	0.8160
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	7.7	0.8100
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	8.0	0.8394
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	10.5	0.8417

Compare expression of checked genes

Lus10027074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.