Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31820 207 / 2e-63 Ankyrin repeat family protein (.1) AT1G05640 189 / 1e-56 Ankyrin repeat family protein (.1) AT5G60070 101 / 5e-25 ankyrin repeat family protein (.1) AT1G07710 91 / 2e-21 Ankyrin repeat family protein (.1) AT5G02620 78 / 7e-17 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 68 / 2e-13 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 64 / 4e-12 Ankyrin repeat family protein (.1) AT2G01680 56 / 5e-09 Ankyrin repeat family protein (.1) AT4G03500 52 / 9e-08 Ankyrin repeat family protein (.1) AT4G14390 44 / 3e-05 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008329 [exp] 367 / 2e-125 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 104 / 5e-26 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 104 / 6e-26 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 86 / 3e-19 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10040335 [exp] 69 / 2e-13 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10025288 [exp] 66 / 3e-13 AT5G02620 131 / 2e-43 ankyrin-like1 (.1) Lus10023460 [exp] 66 / 1e-12 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10030312 [exp] 64 / 5e-12 AT3G12360 299 / 2e-97 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003308 [exp] 62 / 2e-11 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006800 [exp] 206 / 5e-63 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 201 / 4e-61 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 103 / 1e-25 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 100 / 1e-24 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 99 / 6e-24 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 97 / 2e-23 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 91 / 3e-21 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 69 / 1e-13 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 65 / 2e-12 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 62 / 3e-11 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027075 pacid=23151626 polypeptide=Lus10027075 locus=Lus10027075.g ID=Lus10027075.BGIv1.0 annot-version=v1.0 ATGATGGCGAGTGTTGGAGAAGTGATCATGGAGAACCAAACAAGTTCCAAGGTGGAGGAGCCTACTACAACAATGGAGAAACCCAAAAAGAAATTGGTGA AACACCTGAGTTTCCAAGGCGTGACAGTTGTAGGAGGGAACGACGAGAATCGCAGAGCAGTGATGGATAGACACCCGAGCTTCAGAGGAGCAATGGAGAA GCAGAAGAGTTTCCGTGGCTTTGTCGAGAAGCAAAAGAGCTTCCGTGCTGTCATGGAGAGGCAGCTGAGCTTTATCGGTGTCAGCGAGAGGAAGAAAACC GGCAAAGAGTCTTCTCCTGGGAAGCGGGGTGATTCGCCGCTTCATTTGGCTGCTCGCGCTGCGAATTTGAGTAAGGTTAGGGAGATTCTTCAGAAATGTG GTGATGCAAGAAGTGAAGCAAAGGGTTTGCTGTCGGTTCAGAATCAAGAAGGAGAGACTCCTCTATATGCAGCAGCGGAATGCGGGCTAGCTGATGTGGT TTCTGAGATGTTGGGTTATATGGACTTGGATACAGCTTCCATTGCTGCTAGGAATGGATTTGATCCTTTCCATGTTGCAGCAAAGCAAGGTCATTTAGGT AAAGACTTCAGCTAG
AA sequence Show only first row Show all	>Lus10027075 pacid=23151626 polypeptide=Lus10027075 locus=Lus10027075.g ID=Lus10027075.BGIv1.0 annot-version=v1.0 MMASVGEVIMENQTSSKVEEPTTTMEKPKKKLVKHLSFQGVTVVGGNDENRRAVMDRHPSFRGAMEKQKSFRGFVEKQKSFRAVMERQLSFIGVSERKKT GKESSPGKRGDSPLHLAARAANLSKVREILQKCGDARSEAKGLLSVQNQEGETPLYAAAECGLADVVSEMLGYMDLDTASIAARNGFDPFHVAAKQGHLG KDFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	1.0	0.9156
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	1.7	0.8744
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	2.0	0.8985
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	4.0	0.8676
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	5.5	0.8503
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	6.2	0.8193
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	8.4	0.8553
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	8.4	0.8346
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	9.2	0.8198
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	9.9	0.8302

Compare expression of checked genes

Lus10027075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.