Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013551 [exp] 117 / 3e-31 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10008326 [exp] 99 / 3e-26 ND / Lus10019772 [exp] 82 / 1e-18 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 79 / 7e-18 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 78 / 2e-17 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10007254 [exp] 78 / 3e-17 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013550 [exp] 73 / 1e-15 AT3G11910 79 / 1e-14 ubiquitin-specific protease 13 (.1.2) Lus10013548 [exp] 73 / 1e-15 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 69 / 1e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027076 pacid=23151543 polypeptide=Lus10027076 locus=Lus10027076.g ID=Lus10027076.BGIv1.0 annot-version=v1.0 ATGCTAACCTCTGTGGCAGAGTTCAAGCAGGGCTTCCCTAAAGCTGTCACTGAAATTCAGACTTCCATGGATGTCGAAAAATCCAGTTCGGTTTCTCTCG GGGAATTGGAAGGAAAGCTTGTTAAGAAGCAGGTAGATATGCGTGTTCTAGAGTCCGACATATCGAGACTCGGAAAGGAGGTGGTGGAGCTGGAGGCTGA GATTCAGGTGTTACTTGCTCGGAAGGCTAAAGTGGGCGATGAGAAGAAATCAATGGAACTTCATGCGGAAGAGGCCAACCAAGAAGCTTCCGAGGAATTG GAACAGGGGAAGAAACTGGTGGAAGAGCGTGACGAAGCTAGTCGGAAGAAGATTCGAGCCACAGAGATACTTGCTCATTTTAATGCAAGTTGGAAGCTTT TCAAAGAGTTTTTGGAATTGTGA
AA sequence Show only first row Show all	>Lus10027076 pacid=23151543 polypeptide=Lus10027076 locus=Lus10027076.g ID=Lus10027076.BGIv1.0 annot-version=v1.0 MLTSVAEFKQGFPKAVTEIQTSMDVEKSSSVSLGELEGKLVKKQVDMRVLESDISRLGKEVVELEAEIQVLLARKAKVGDEKKSMELHAEEANQEASEEL EQGKKLVEERDEASRKKIRATEILAHFNASWKLFKEFLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027076 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	4.0	0.9526
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10015044 [exp]	5.7	0.8036
					Lus10003825 [exp]	6.8	0.9368
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	8.3	0.9368
AT5G56990			unknown protein		Lus10029528 [exp]	9.6	0.9368
					Lus10038051 [exp]	10.7	0.9368
AT5G01660			unknown protein		Lus10040599 [exp]	11.7	0.9368
					Lus10029261 [exp]	12.7	0.9368
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	13.6	0.9368
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	14.0	0.7704

Compare expression of checked genes

Lus10027076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.