Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59980 285 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) AT4G13780 138 / 2e-36 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT2G40660 112 / 4e-28 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025611 [exp] 464 / 3e-166 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022571 [exp] 160 / 3e-44 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10016658 [exp] 160 / 4e-44 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10034239 [exp] 120 / 5e-31 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029026 [exp] 117 / 3e-30 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000200 [exp] 290 / 3e-98 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G317500 [exp] 155 / 1e-42 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G057700 [exp] 151 / 6e-41 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.019G058700 [exp] 114 / 3e-29 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01588 [flax] [poplar] tRNA_bind Putative tRNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027077 pacid=23151613 polypeptide=Lus10027077 locus=Lus10027077.g ID=Lus10027077.BGIv1.0 annot-version=v1.0 ATGGCGCTGGCAGCAACTGCCAACTCCACCAAGACGGCGGCGGGGACAGCAGGGGCCCGCCCTCTTTTCTGTGTGGGGGGTGAAGTCTATACCCCCCCTC CGCGTGGTAGTAGATTTCCACCGCTCATTCGGCGATCATCTCCACCCAATGCAGTCTCTTGCTCCCTTCATCGATTCCGATTTCGTCCTCTGACTACTAC TACCCTTTCCAACAGCAGAGCGCTCCCGTCAATCTCCCGCGAAACTCCTCCCTTCGTATCTTTCTGTACATCTGCAGAGGCAGCCAGCGTCAACTCGAAA TCGGCGGACAATACAGCCGCCGCAGCCGACGGAAGTCAGATTCTGAAGAAAGAAGAGACTGAGGGCGGCGGTATAAGAGATGCAGCTAACCTGCTCGACC TAAGGGTGGGGAAGATAATCAAAGCATGGAGGCACGAGGAGGCAGATTCGCTCTACGTGGAAGAAGTGGACATCGGAGAAGCTGAGCCTCGCATAATTTG CAGCGGCCTTGTCAAGTACATTCCCCTGCAACATCTTGAGGACAGGAAAGTGGTGGTGCTGGCTAATCTGAAGCCAAGGAACATGCGTGGGGTGAAATCA AATGGAATGCTGATGGCTGCTTCTGATGCTGCCCATGAAAACGTTGAGCTTCTCGAGCCTCCGGAAGGTTCGATCCCTGGGGAGAGAATCTGGTTTGGCT CTGAGGATGAAAAAGATGCCCAACCTGACCCAGCCTCTCCTAACCAGGTTCAAAAGAAGAAGATATGGGAAGCCATGCAGCCTCGTCTGAAGACTAACGA TACGGGAGTAGCTATGCTCGAGCAGCATGAAATGAGGACATCGTCAGGTGTGGTAGTGAGCAAGTCTCTGCTGAATGCAAATATATCTTGA
AA sequence Show only first row Show all	>Lus10027077 pacid=23151613 polypeptide=Lus10027077 locus=Lus10027077.g ID=Lus10027077.BGIv1.0 annot-version=v1.0 MALAATANSTKTAAGTAGARPLFCVGGEVYTPPPRGSRFPPLIRRSSPPNAVSCSLHRFRFRPLTTTTLSNSRALPSISRETPPFVSFCTSAEAASVNSK SADNTAAAADGSQILKKEETEGGGIRDAANLLDLRVGKIIKAWRHEEADSLYVEEVDIGEAEPRIICSGLVKYIPLQHLEDRKVVVLANLKPRNMRGVKS NGMLMAASDAAHENVELLEPPEGSIPGERIWFGSEDEKDAQPDPASPNQVQKKKIWEAMQPRLKTNDTGVAMLEQHEMRTSSGVVVSKSLLNANIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10027077 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	4.4	0.7164
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	15.2	0.7084
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	19.0	0.6822
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	22.5	0.6432
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	26.2	0.6308
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	34.3	0.6935
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	37.8	0.6574
AT2G44870			unknown protein		Lus10020395 [exp]	62.6	0.6592
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040240 [exp]	67.9	0.6286
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	83.0	0.6218

Compare expression of checked genes

Lus10027077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.