Plant FIBer expression Database

Lus10027078 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59970 1038 / 0 MTHFR1 methylenetetrahydrofolate reductase 1 (.1.2.3)
AT2G44160 1022 / 0 MTHFR2 methylenetetrahydrofolate reductase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025610
[exp]
1253 / 0 AT3G59970 1035 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G000300
[exp]
1071 / 0 AT2G44160 1038 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
Potri.007G147300
[exp]
1064 / 0 AT2G44160 1048 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0086 FAD_oxidored PF02219 MTHFR Methylenetetrahydrofolate reductase
Representative CDS sequence
>Lus10027078 pacid=23151504 polypeptide=Lus10027078 locus=Lus10027078.g ID=Lus10027078.BGIv1.0 annot-version=v1.0
ATGAAGGTGATCGATAAGATCAGATCAGCTGTCGGCGACTCACCGTCGGCCAATGGCGGGGATGTCTCCGGCAAGAACGTCGTCTTCTCCTTCGAGTTCT
TCCCTCCCAAGACCGACGACGGCGTCGAGAACCTCTTCGAGAGGATGGACCGGATGGTGGCTCACAACCCTACCTTCTGCGACATCACCTGGGGAGCTGG
AGGCTCCACCGCCGATCTCACCCTCGACATCGCCAAGAGGATGCAGAACTCCGTCTGCGTCGAGACCATGATGCACCTCACCTGCACCAACATGCCTGTC
GAGAAGATCGATCACGCGCTCGACACTATCAAATCCAACGGCATTCAGAATGTCCTCGCTCTCCGTGGTGATCCTCCCCATGGCCAGGACAAGTTCGTCC
AGATCCAAGGCGGATTCGCTTGTGCTCTCGACCTGGTGAAGCACATGAGATCCAAGTATGGAGACTACTTCGGAATTACTGTTGCTGGCTATCCAGAGGC
TCATCCTGATGTGATCGGAAGTGATGGCCTAGCCACACCAGAAGCTTATCAGAGCGATCTTGCTTATTTGAAGCAGAAGGTTGATGCTGGAGCGGATTTG
ATTGTCACTCAACTATTCTATGATACTGATATTTTCCTTAAATTCGTCAATGACTGCCGCCAAATTGGAATTACTTGCCCAATTGTCCCTGGCATTATGC
CTATTAACAACTACAAAGGATTCATAAGAATGACTGGCTTTTGCAAAACTAAGATACCAGCTGAGGTCACTGCTGCATTGGAACCCATCAAAGACAACGA
TGAAGCTGTCAGAGCATATGGAGTTCATCTTGGAGCAGAAATGTGCAAAAAGATCATAGCTCATGGGATTAGCACAGTGCACCTTTACACGCTAAACATG
GAGAAATCAGCACTGGGGATACTATCGACTCTTGGTGCGATTGAAGAGTCCAAGATCTCAAGGTCTCTGCCTTGGCGGCGTCCAGCAAATATTTACCGTG
TGAAGGAAGATGTTCGCCCAATATTTTGGGCTAACCGTCCAAAGAGCTATTTATCAAGGACAGTTGGATGGGAGCAATACCCACACGGGAGATGGGGTGA
TTCTGGTAATCCATCCTACAGTGCTTTGAGTGATCACCAGTTCATGCGCCCACGATCACGCGACAAGAAGCTTCAGGAAGAGTGGGCTATCCAGCTCAGC
AGTGTTGAAGATATCTATGAGAGGTTCAAGAATTACTGCCTCGGGACCTCGAAGAGCAGCCCATGGTCAGAATTAGATGGCCTTCAGCCAGAGACCAAGA
TCATCAATGAAAAACTTGGCAAGATCAATTCCAAGGGATTCTTAACCATAAACAGTCAACCCGCTGTCAACGGGGAGAAGTCTGATTCCCCGATTGTTGG
CTGGGGAGGCCCAGGAGGATATGTATACCAAAAGGCATATCTAGAGTTCTTCTGCTCAAAGGAGAAACTCGATAAGTTGGTCGAGAAGTCCAAGGCCTTC
CCTCAACTCAGTTACATTGCAGTGAACAAATCGGGGAGTTTGTTCTCGAACGTCGGAGAAGGCGCTGTGAATGCAGTGACATGGGGAGTTTTCCCAGCAA
AGGAGATCCTCCAGCCAACAGTGGTGGATCCTGCCAGCTTCTTAGTGTGGAAGGATGAGGCTTTCGAGATCTGGTCAAGAGGCTGGGCTTCATTGTATCC
GGAAGACGATCCCTCCCGAAAATTGCTTAAAGAGGTGGAGAGCAGCTACTATTTGGTGAGTTTGGTAGATAACGACTATGTGAATGGTGATATCTTCTCG
GCATTTGACTTGTGA
AA sequence
>Lus10027078 pacid=23151504 polypeptide=Lus10027078 locus=Lus10027078.g ID=Lus10027078.BGIv1.0 annot-version=v1.0
MKVIDKIRSAVGDSPSANGGDVSGKNVVFSFEFFPPKTDDGVENLFERMDRMVAHNPTFCDITWGAGGSTADLTLDIAKRMQNSVCVETMMHLTCTNMPV
EKIDHALDTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHMRSKYGDYFGITVAGYPEAHPDVIGSDGLATPEAYQSDLAYLKQKVDAGADL
IVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFIRMTGFCKTKIPAEVTAALEPIKDNDEAVRAYGVHLGAEMCKKIIAHGISTVHLYTLNM
EKSALGILSTLGAIEESKISRSLPWRRPANIYRVKEDVRPIFWANRPKSYLSRTVGWEQYPHGRWGDSGNPSYSALSDHQFMRPRSRDKKLQEEWAIQLS
SVEDIYERFKNYCLGTSKSSPWSELDGLQPETKIINEKLGKINSKGFLTINSQPAVNGEKSDSPIVGWGGPGGYVYQKAYLEFFCSKEKLDKLVEKSKAF
PQLSYIAVNKSGSLFSNVGEGAVNAVTWGVFPAKEILQPTVVDPASFLVWKDEAFEIWSRGWASLYPEDDPSRKLLKEVESSYYLVSLVDNDYVNGDIFS
AFDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59970 MTHFR1 methylenetetrahydrofolate redu... Lus10027078
[exp]
0 1
AT4G13930 SHM4 serine hydroxymethyltransferas... Lus10032592
[exp]
1.4 0.9769
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Lus10002620
[exp]
3.5 0.9674
AT1G19940 ATGH9B5 glycosyl hydrolase 9B5 (.1) Lus10033156
[exp]
6.3 0.9594
AT3G42950 Pectin lyase-like superfamily ... Lus10027646
[exp]
8.1 0.9710
AT2G45300 RNA 3'-terminal phosphate cycl... Lus10000788
[exp]
8.1 0.9691
AT1G12260 NAC ANAC007, VND4, ... VASCULAR RELATED NAC-DOMAIN PR... Lus10031142
[exp]
11.0 0.9658
AT1G48850 EMB1144 embryo defective 1144, chorism... Lus10037189
[exp]
13.4 0.9595
AT1G19170 Pectin lyase-like superfamily ... Lus10039909
[exp]
13.9 0.9616
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Lus10003363
[exp]
14.2 0.9633
AT2G37090 IRX9 IRREGULAR XYLEM 9, Nucleotide-... Lus10026487
[exp]
15.9 0.9648

Lus10027078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.