Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44140 512 / 4e-180 Peptidase family C54 protein (.1.2) AT3G59950 498 / 2e-174 Peptidase family C54 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025609 [exp] 824 / 0 AT2G44140 547 / 0.0 Peptidase family C54 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G147100 [exp] 585 / 0 AT2G44140 534 / 0.0 Peptidase family C54 protein (.1.2) Potri.017G000500 [exp] 577 / 0 AT2G44140 523 / 0.0 Peptidase family C54 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF03416 [flax] [poplar] Peptidase_C54 Peptidase family C54
Representative CDS sequence Show only first row Show all	>Lus10027079 pacid=23151564 polypeptide=Lus10027079 locus=Lus10027079.g ID=Lus10027079.BGIv1.0 annot-version=v1.0 ATGAAGGGTTTTCATGAGAAGGTTGATAGCTCAAAAATCTGTTTAGAAACGCCTACTGGGTCATCAACTAGTACTTCAACGTCTGATTGTTTCGAACCAA GACCCAGTGACAGCAAGTTCTCAAGGGACTCATTGTGGTCGAGCTTCTTTTCATCTGCTTTCTCAGCCTTTGAGTCATATCGTGGTTCATCAACTCGTGA AAAAAAGGAGGTTCATATCAAAAGTAATGGTTGGACGTCAGTTGTAAAGAAAGTTGTGGCAGGCAGTTCAATGAGGCGACTTCACGAGCGGGTACTTGGA CCAACGAATGTTGGGATACCTACCTCAACAAGTGACATATGGCTGCTGGGTACATGCTATAAGATTTTATGTGATGGTTGCCCTGCAGATGTAGCTATAA CCAATACTTTAGCTGAATTTACCGAGGATTTTTCATCTAGAATCCTAATTACATACAGGAAAGGTTTTGATGCCATTGGAGATTCTAAGTTTACAAGTGA TGTAGGCTGGGGCTGCATGGTTCGAAGCAGCCAGATGTTGATTGCTCAAGCATTGCTTTGTCACCAGTTCGGTAGATCTTGGAGAAGACCTTTGGCCAAG CCAGTAGAGCAAGAATATATCAATATCTTGCACCTTTTTGGTGATTCAGAGGCATCAGCATTCTCCATCCATAATCTACTTCTAGCTGGAAAGAGTTATG GCCTTGCAGCTGGATCATGGGTAGGGCCATACGCGATGTGCCGATCCTGGGAAGCTCTGGTTCACTCAAAGAAAGGGGAAACCATCCCTGAGTTCCAGTC ATTTCCGATGGCTCTTTATGTTGTTTCTGGAGATGAAAACGGGGAACGAGGTGGCGCTCCAGTTGTCTGCATTGAAGATGCCCATAAAAGTTGTTTAGCA TTTTCTGATGGACAGAGAGACTGGACTCCAATTCTTCTATTGGTTCCTCTTGTCCTCGGACTTGACAAAGTAAACCCCAGGTATATTCCATCTCTCCAGG CAACATTCACCTTTCCCCAAAGCCTTGGCATTTTAGGCGGAAAACCTGGTGCTTCAACATACATGGTTGGGGTGCAAGATGACAATGCTTTTTATCTTGA TCCACACGACGTCCAGCAGGTAGTCAGCATCCACAGAGATGATTTGGAGGCTGATGCATCATCATACCATTCCAATGTCATACGACATATTCCTCTGGAA TCAATCGATCCCTCGCTCGCAATTGGGTTCTACTGCCGAGACAAAGATGACTTTGATGAGTTCTGTTCATTGGCTTCCAAGTTAGCCGAAGAGTCCAACG GCGCACCATTATTTACGGTGGCGCAATCCCTTAAAAGTACATTCGTCGGCAGCAGCGATGGTTACCAGGAAGAAGTAAGCAGCGTGGATGCGCAGCAGAA TGAAGACGAATGGCAGTTACTCTAA
AA sequence Show only first row Show all	>Lus10027079 pacid=23151564 polypeptide=Lus10027079 locus=Lus10027079.g ID=Lus10027079.BGIv1.0 annot-version=v1.0 MKGFHEKVDSSKICLETPTGSSTSTSTSDCFEPRPSDSKFSRDSLWSSFFSSAFSAFESYRGSSTREKKEVHIKSNGWTSVVKKVVAGSSMRRLHERVLG PTNVGIPTSTSDIWLLGTCYKILCDGCPADVAITNTLAEFTEDFSSRILITYRKGFDAIGDSKFTSDVGWGCMVRSSQMLIAQALLCHQFGRSWRRPLAK PVEQEYINILHLFGDSEASAFSIHNLLLAGKSYGLAAGSWVGPYAMCRSWEALVHSKKGETIPEFQSFPMALYVVSGDENGERGGAPVVCIEDAHKSCLA FSDGQRDWTPILLLVPLVLGLDKVNPRYIPSLQATFTFPQSLGILGGKPGASTYMVGVQDDNAFYLDPHDVQQVVSIHRDDLEADASSYHSNVIRHIPLE SIDPSLAIGFYCRDKDDFDEFCSLASKLAEESNGAPLFTVAQSLKSTFVGSSDGYQEEVSSVDAQQNEDEWQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	0	1
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	1.4	0.9630
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	1.4	0.9703
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	1.7	0.9558
AT4G10970			unknown protein		Lus10023075 [exp]	3.2	0.9524
					Lus10034398 [exp]	3.5	0.9556
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	3.7	0.9511
AT2G30105			unknown protein		Lus10031861 [exp]	4.5	0.9486
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	5.7	0.9478
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	6.2	0.9470
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	7.1	0.9430

Compare expression of checked genes

Lus10027079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.