Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43970 273 / 6e-85 RNA-binding protein (.1.2) AT3G19090 199 / 8e-58 RNA-binding protein (.1) AT5G46250 172 / 6e-48 RNA-binding protein (.1.2.3) AT4G32720 52 / 5e-07 ATLA1 La protein 1 (.1.2) AT1G79880 47 / 4e-05 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025608 [exp] 726 / 0 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10012058 [exp] 212 / 3e-62 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 178 / 7e-51 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10023315 [exp] 174 / 5e-49 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 169 / 4e-47 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10022135 [exp] 58 / 1e-08 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 52 / 8e-07 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10011685 [exp] 51 / 2e-06 AT4G32720 382 / 1e-128 La protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144800 [exp] 362 / 1e-119 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 346 / 1e-113 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 207 / 4e-61 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 197 / 2e-57 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.011G080700 [exp] 152 / 2e-41 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10027080 pacid=23151578 polypeptide=Lus10027080 locus=Lus10027080.g ID=Lus10027080.BGIv1.0 annot-version=v1.0 ATGGCACAAGACGGAACTGAATCACCACCGGAAACCCTAGAAAAGCCTTACCAGTCCTCTACATCTCCGGTCGATTCCCCTACAGCTGATTCCGCTGATC CTTCACTATCTCGCACTGGATCGTTCAGTAAGCTCAACGCTCGAGCTCCAGAGTTCGTCCCTAGTACTACTGCTCGCCCTCAGCAACCGCCGCCAGCTCC TCCGCCTGCGAGGCTTTCTGTGATCCCGCCACCTGCTGCTGCTATGATGCATATGTATCCGCCTGCTAACTCTCCTCCTCCTCCAGCGGTTACTCCGCCG TCTCCTTACCACGTCCAGATTCACAGTCCTGTGCCGGTAGCTCATGTCATCCCGGTACAGAATCACCATCACCGTCCGCATCATCATAACCAGCTGCAGC AGCCTCCGCAGCAGTATGTTCCTGTTCGAAATCACAACAATCATCACCACCACCACCACTTCGCTCAGAACGCTCACTATATCCCCGTAGAGGCCCACGC CAATCAGAATCATCATTATGGTCCCGTTTCCAAGAAGTTGCCGCAGCAATCAGAGGAAGGAGAGCAAAGCGAAATTCCAGATCACGGACGGTCCAAGAAC GAAAGGACCGATAGAAGTGGGTTCTCTGATGACAATATGCAGAAGCTTGTGAATCAAGTAGAGTACTATTTCAGCGACTTAAACTTGGCTACTACTGATC ATCTGATGAGGTTCATCAACAAGGATCGTGATGGATATGTGCCGATAAATGTTGTAGCTTCTTTCAAGAAGGTCAAAGCTGCTGTAAATAATAATGTTCA ACTTGCCAACATTTTGAAGAACTCTTCGAAGCTTGCTGTCAGTGAAGATGGGAAAAAAGTCAAACGGCAGCAACCATTTACTGAGCAGGATGTGGAAGAT TTGCAGTCCCGCATCATTGTTGCTGAAAATTTACCGGAGGATCATTGCCACCAAAACCTAATGAAGATTTTCTCATCTGTTGGAAGTGTTAAGACTATTC GCACCTGCCCTCCTCAAAATCCTGCTGGGGCTTCGTCAGCGTCTAGATCTACGAAAGCTGAAGGAATGTACTTCATTAACAAGCTGCATGCATTTGTGGA GTATGACTCTGTGGAGATAGCTGAGAAAGCAGTTATGGAGCTCAATGATGAAGCGAACTGGAGGAACGGTCTTAGGGTTCGACTAATGCTTAAACGTCCA TCAAAGACGGTGCGAGGGAAGAAAGGTAACGATGGGCCAGAAGAAGAGGAGGTTTCTACCTCTGAGCAGCAGCCTAATGAAAAGCATGTTGAAGATATTT CTATGCAGCAGCATGATGTCCACTTCAATGACCCTTCTCCTCATGTACAGGAGGAGGATAATCACAACGAGAAGGAAGGGGTGCAGAGAAAAGGCCGTGG AAGAGGGGGACGGGGAAAGGGACGCAGTCGGGGCCATTCTCACCACAACAGCGGCCGAGGAAATCACACCGTTGGGAATCCATCTTCAGGTAACGCTACA GCCGGTACGTCTGAGCAGCAGCCGAATACATTGAAGCAAGCACCTCCACCAGGGCCCCGAATGCCTGATGGGACCAGAGGTTTTGCAATGGGGCGTGGGA AGCCAATCTCGGTTATTGCAGCATGA
AA sequence Show only first row Show all	>Lus10027080 pacid=23151578 polypeptide=Lus10027080 locus=Lus10027080.g ID=Lus10027080.BGIv1.0 annot-version=v1.0 MAQDGTESPPETLEKPYQSSTSPVDSPTADSADPSLSRTGSFSKLNARAPEFVPSTTARPQQPPPAPPPARLSVIPPPAAAMMHMYPPANSPPPPAVTPP SPYHVQIHSPVPVAHVIPVQNHHHRPHHHNQLQQPPQQYVPVRNHNNHHHHHHFAQNAHYIPVEAHANQNHHYGPVSKKLPQQSEEGEQSEIPDHGRSKN ERTDRSGFSDDNMQKLVNQVEYYFSDLNLATTDHLMRFINKDRDGYVPINVVASFKKVKAAVNNNVQLANILKNSSKLAVSEDGKKVKRQQPFTEQDVED LQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCPPQNPAGASSASRSTKAEGMYFINKLHAFVEYDSVEIAEKAVMELNDEANWRNGLRVRLMLKRP SKTVRGKKGNDGPEEEEVSTSEQQPNEKHVEDISMQQHDVHFNDPSPHVQEEDNHNEKEGVQRKGRGRGGRGKGRSRGHSHHNSGRGNHTVGNPSSGNAT AGTSEQQPNTLKQAPPPGPRMPDGTRGFAMGRGKPISVIAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	1.4	0.8658
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	2.0	0.8389
AT5G11810			unknown protein		Lus10022300 [exp]	4.9	0.8403
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Lus10002674 [exp]	6.0	0.8295
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	7.3	0.8413
AT5G16550			unknown protein		Lus10003850 [exp]	12.0	0.7850
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	12.4	0.8299
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	13.5	0.8206
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	16.7	0.7186
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	17.0	0.7442

Compare expression of checked genes

Lus10027080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.