Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 130 / 8e-39 Calcium-binding EF-hand family protein (.1.2) AT1G73630 122 / 1e-35 EF hand calcium-binding protein family (.1) AT1G66400 100 / 2e-27 CML23 calmodulin like 23 (.1) AT5G37770 89 / 9e-23 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 87 / 1e-21 EF hand calcium-binding protein family (.1) AT2G36180 79 / 3e-19 EF hand calcium-binding protein family (.1) AT2G27030 80 / 4e-19 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G10190 80 / 8e-19 Calcium-binding EF-hand family protein (.1) AT5G21274 78 / 8e-19 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 77 / 1e-18 ACAM-3, CAM3 calmodulin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031345 [exp] 171 / 8e-55 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 166 / 6e-53 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 144 / 3e-44 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10028516 [exp] 97 / 2e-26 AT1G66400 118 / 4e-35 calmodulin like 23 (.1) Lus10009127 [exp] 97 / 1e-24 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10028913 [exp] 82 / 4e-20 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 82 / 4e-20 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10014050 [exp] 81 / 2e-19 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10042008 [exp] 79 / 3e-19 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048200 [exp] 135 / 5e-41 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 131 / 3e-39 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 97 / 3e-26 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.017G126200 [exp] 96 / 2e-25 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.010G107100 [exp] 87 / 9e-22 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 86 / 3e-21 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G032600 [exp] 81 / 1e-19 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 80 / 2e-19 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 80 / 3e-19 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.009G102500 [exp] 80 / 4e-19 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027081 pacid=23151534 polypeptide=Lus10027081 locus=Lus10027081.g ID=Lus10027081.BGIv1.0 annot-version=v1.0 ATGGACGACATCAACACCGACAAGGACGGGTTCATCAACTTGGAGGAGTTCGCCGAGCTCTGCCGCTCGTCTTCCGGAGCGTCCGCGGAGGCGGAGCTTC ACGAGGCGTTTAATCTGTATGATGAGGATAAGGACGGGCTGATATCCATCTCAGAGCTCCACCACGTGCTGAATCGGCTGGGGATGAAGTGCTCGATGAA GGAGTGCGGGAGGATGATTCAGGGAGTTGATTCTGACGGAGACGGCTGCGTTAATTTCGCAGAGTTTGAGAAGATGATGGTTGCCGCCTCCCGTAAGCTT CTGCTGAAGAAACAAACGGAGAAGACGACGAGCGGCGATGGGTCCTTGAATGGAGTCTTTGAATCCCTCAACCATGAACCTCGACCATCTCCACCATCTC CATCATCTAAGCTTGGATTTGAGATTTGGAGATATGCTTTAGATGGATTCAACCGATTTACGTCAGATTCGGGTTATATATGTTTCTTCGAGTAG
AA sequence Show only first row Show all	>Lus10027081 pacid=23151534 polypeptide=Lus10027081 locus=Lus10027081.g ID=Lus10027081.BGIv1.0 annot-version=v1.0 MDDINTDKDGFINLEEFAELCRSSSGASAEAELHEAFNLYDEDKDGLISISELHHVLNRLGMKCSMKECGRMIQGVDSDGDGCVNFAEFEKMMVAASRKL LLKKQTEKTTSGDGSLNGVFESLNHEPRPSPPSPSSKLGFEIWRYALDGFNRFTSDSGYICFFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18210			Calcium-binding EF-hand family...		Lus10027081 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	1.4	0.9237
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	2.0	0.9102
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	9.2	0.8830
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	10.1	0.8838
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	11.4	0.9006
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	12.6	0.8896
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	13.7	0.8959
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	15.2	0.8758
					Lus10014031 [exp]	16.5	0.8433
					Lus10015488 [exp]	17.0	0.8757

Compare expression of checked genes

Lus10027081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.