Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56280 494 / 1e-177 CSN6A COP9 signalosome subunit 6A (.1) AT4G26430 481 / 2e-172 CSN6B COP9 signalosome subunit 6B (.1) AT5G05780 77 / 9e-16 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 73 / 3e-14 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT2G39990 47 / 8e-06 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025607 [exp] 288 / 2e-98 AT5G56280 261 / 1e-88 COP9 signalosome subunit 6A (.1) Lus10025606 [exp] 103 / 9e-28 AT4G26430 75 / 1e-17 COP9 signalosome subunit 6B (.1) Lus10027775 [exp] 69 / 5e-13 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 68 / 1e-12 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10028272 [exp] 65 / 8e-12 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 65 / 1e-11 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169900 [exp] 520 / 0 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1) Potri.010G192200 [exp] 80 / 1e-16 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065300 [exp] 77 / 6e-16 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 74 / 9e-15 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192000 [exp] 62 / 8e-11 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10027082 pacid=23151611 polypeptide=Lus10027082 locus=Lus10027082.g ID=Lus10027082.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGTCAAGCAGCGGACTCACTTTCAAGCTTCACCCGCTGGTGATTGTTAATGTCTCCGATCATTACACTCGTGTCAAGTCTCAGGCAAACC CTCCTGCCCTCCCCAGCACAAGCGGCACCAACGGCTGCGGCGGAGATTCCGCTCCCGCTTCCGCCACGGCTTCCACGGAACCGCCGCCGAGAGTCTATGG CTGCGTGATAGGTGTTCAGAGGGGACGAACAGTTGAGATCTTCAACAGTTTCGAGCTTCTATATGACCCCGAGACCCACTCCCTTGACCGCGCTTTCCTT GAGAAGAAGCAAGAACTCTATAAGAAGGTTTTCCCGCACTACTACGTATTAGGATGGTATTCTACTGGCTGTGATGCGGATGAATCAGATATGATCATAC ATAAAGCTTTGATGGATATTAATGAAAGCCCTGTCTATGTTCTGCTGAATCCTGGCATAAATCATGCTCAGAAAGATCTTCCAGTCACTATTTTTGAAAG TGAGCTGCATGTGATAGAAGGAATTCCACAACTTATTTTTGTCTGCTCAAGCTACACAATTGAGACAGTAGAAGCGGAACGGATTTCAGTTGACCATGTT GCTCATCTTAAACCATCTGATGGGGGTTCTGCAGCCACCCAATGCAAGTCTCTTTGCTTATTGGCTGCTCATCTTACCGGCATACACAGTGCCATCAAGA TGTTAAATAGCAGAATTAAGGTGCTTCATTACTATCTTGTAGAAATGCAGAAAGGTGTGGTTCCCCGCGATAACTCGTTGCTTAGGCAAGTGTCAAGCCT TCTAAGAAGACTGCCAGCTATTGAATCTGAAAAGTTCCAAGATGATTTCTTGATGGAATATAATGACACACTATTGATAGCTTACCTGGCCATGATCACC AATTGCTCAAGTACAATGAACGAGCTGGTAGACAAGTTCAACACTGCATACGATAGGCAGAGTCGAAGGGGCGGCCGAACTGCTTTCATCTGA
AA sequence Show only first row Show all	>Lus10027082 pacid=23151611 polypeptide=Lus10027082 locus=Lus10027082.g ID=Lus10027082.BGIv1.0 annot-version=v1.0 MASSSSSGLTFKLHPLVIVNVSDHYTRVKSQANPPALPSTSGTNGCGGDSAPASATASTEPPPRVYGCVIGVQRGRTVEIFNSFELLYDPETHSLDRAFL EKKQELYKKVFPHYYVLGWYSTGCDADESDMIIHKALMDINESPVYVLLNPGINHAQKDLPVTIFESELHVIEGIPQLIFVCSSYTIETVEAERISVDHV AHLKPSDGGSAATQCKSLCLLAAHLTGIHSAIKMLNSRIKVLHYYLVEMQKGVVPRDNSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMIT NCSSTMNELVDKFNTAYDRQSRRGGRTAFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	0	1
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	4.8	0.8706
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	6.3	0.8196
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	8.2	0.8560
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	8.7	0.8637
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	11.0	0.8546
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	11.6	0.8280
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	14.1	0.8515
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	14.1	0.8619
AT5G21140		EMB1379	embryo defective 1379 (.1)		Lus10019555 [exp]	15.2	0.7843
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	18.2	0.8343

Compare expression of checked genes

Lus10027082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.