Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56180 295 / 5e-97 ATARP8 actin-related protein 8 (.1.2) AT2G42100 97 / 6e-22 Actin-like ATPase superfamily protein (.1) AT3G53750 91 / 9e-20 ACT3 actin 3 (.1) AT2G37620 91 / 9e-20 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 88 / 8e-19 ACT11 actin-11 (.1) AT5G09810 87 / 2e-18 ACT2/7, ACT7 actin 7 (.1) AT3G18780 83 / 2e-17 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 83 / 3e-17 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42170 82 / 4e-17 Actin family protein (.1) AT2G42090 82 / 7e-17 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025605 [exp] 550 / 0 AT5G56180 642 / 0.0 actin-related protein 8 (.1.2) Lus10004169 [exp] 87 / 2e-18 AT3G12110 723 / 0.0 actin-11 (.1) Lus10021057 [exp] 87 / 2e-18 AT3G12110 727 / 0.0 actin-11 (.1) Lus10006783 [exp] 86 / 3e-18 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 86 / 3e-18 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 86 / 3e-18 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006784 [exp] 86 / 4e-18 AT5G09810 769 / 0.0 actin 7 (.1) Lus10005457 [exp] 86 / 4e-18 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 86 / 4e-18 AT3G12110 768 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471700 [exp] 331 / 1e-109 AT5G56180 672 / 0.0 actin-related protein 8 (.1.2) Potri.001G471400 [exp] 293 / 9e-95 AT5G56180 630 / 0.0 actin-related protein 8 (.1.2) Potri.011G148000 [exp] 87 / 1e-18 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 86 / 3e-18 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 86 / 3e-18 AT5G09810 774 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 86 / 3e-18 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 86 / 4e-18 AT3G12110 765 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 86 / 4e-18 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 86 / 4e-18 AT3G12110 767 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 83 / 3e-17 AT5G09810 769 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027083 pacid=23151596 polypeptide=Lus10027083 locus=Lus10027083.g ID=Lus10027083.BGIv1.0 annot-version=v1.0 ATGTCCGTCTTACTGCGAAAGGTCTGGGAATCCGTCGTCAACAGGCCGAGCCCTTCAGCTTCCGCTTCCAAATTCGAATCCCTCTGTCGCCGGAGTTCTA TCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGTTGCTGTCGCTCGGATCCTTCGATCGGTTGCCGATTGACATTTTGGTACAGATTGTTAGACTAGTTGG ACCTGAGGACGCTGCCAGACTCTCCGTCGCTTCCAAATCATGGAGATCGCTCGTCTCCGATAATCGTCTATGGATTTTCTTCTTCCAGGACAGTGACGAG CCTTGGCCCTGGGACTCTGTTTTCTTCGCCGAGGTTAATCTCCGCTTCGGCTATCCTCTCCAGACATTCCCCAGCCATTTGTCCACGGAGTTGTCTCTGA TGCGCGTCTATGGTGAACGAAGAAAAGTACCCGGAGCCGTAATAATTGACGGTGGGTCGGGCTATTGCAAATTTGGGTGGAGCAAATATGGTAGTCCGTC AGGACGGTCGGCCACATTTTTGGAATTTGGCAACATCGAATCCCCAATGTACTCAAGGCTGCGGCACTTTTTTGCTACCATGTATAGCAGGATGCAAGTC AAGGCATCTACTCAGCCAGTTGTTTTGTCCCTCCCAATTTGCCATTATGATGATACAGAAGCTGCCAGAGCATCAAGACGGCAACTAAAAGGAGCCATCC ACACTGCTCTTTTTGACATGAATGTCCCAGCTATATGTGCAATTAATCAGAACATGTGCTATGTTGCTGAAGATTATCAAGCTGAGCTACGTAAAGATAC TAGAGCATCTATGGAACTCCCGGGAGATGGACAGTTTACACTTTCAACAGAACGGTTCAAAACAGGGGAGATTCTGTTCCAACCAAGACTTGCAGGAGTG CGCACAATGGGATTGCACCAGGCGATATCACTTTGTATGGACCATTGCCATGATGCAGAGTTAGCCGGTGACGATTCTTGGTTCAAAACAGTAGTTTTGG CAGGGGGTACGGCTTGCTTACCAGGACTTGCAGAAAGGCTCGATAAGGAAGTTCGTCTGCTTCTCCCCCCTTCGTTGTGCAAGGGGTTGAAAGTACTCCC TCCCCCATACGGAGTAGATACTGCATGGTTTGGTGCAAAGCTTGTCAGCAATGTAAGGCGCCTTACTTCATTTCAAGTGTTACTTGCACCGGTCGGATTT GAATCGATATTTTTTCCTAACGACCTTTGCTTTTTGAAATCGGACGAATCAATTTTACTAAACCTAATATTAAGTTAA
AA sequence Show only first row Show all	>Lus10027083 pacid=23151596 polypeptide=Lus10027083 locus=Lus10027083.g ID=Lus10027083.BGIv1.0 annot-version=v1.0 MSVLLRKVWESVVNRPSPSASASKFESLCRRSSISSSSSSSSSSLLSLGSFDRLPIDILVQIVRLVGPEDAARLSVASKSWRSLVSDNRLWIFFFQDSDE PWPWDSVFFAEVNLRFGYPLQTFPSHLSTELSLMRVYGERRKVPGAVIIDGGSGYCKFGWSKYGSPSGRSATFLEFGNIESPMYSRLRHFFATMYSRMQV KASTQPVVLSLPICHYDDTEAARASRRQLKGAIHTALFDMNVPAICAINQNMCYVAEDYQAELRKDTRASMELPGDGQFTLSTERFKTGEILFQPRLAGV RTMGLHQAISLCMDHCHDAELAGDDSWFKTVVLAGGTACLPGLAERLDKEVRLLLPPSLCKGLKVLPPPYGVDTAWFGAKLVSNVRRLTSFQVLLAPVGF ESIFFPNDLCFLKSDESILLNLILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	0	1
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	1.4	0.8502
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	4.2	0.8071
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	6.7	0.8203
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	11.7	0.8293
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	12.3	0.8077
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	13.9	0.7457
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	14.7	0.8004
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	17.4	0.7532
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	18.8	0.7608
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	19.0	0.7884

Compare expression of checked genes

Lus10027083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.