Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25710 486 / 7e-174 HCS1 holocarboxylase synthase 1 (.1.2) AT1G37150 464 / 9e-166 HCS2 holocarboxylase synthetase 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025604 [exp] 647 / 0 AT2G25710 492 / 2e-175 holocarboxylase synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173000 [exp] 499 / 3e-179 AT2G25710 482 / 3e-172 holocarboxylase synthase 1 (.1.2) Potri.002G087700 [exp] 498 / 7e-178 AT2G25710 482 / 3e-171 holocarboxylase synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family CL0206 [flax] [poplar] TRB PF02237 [flax] [poplar] BPL_C Biotin protein ligase C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027084 pacid=23151601 polypeptide=Lus10027084 locus=Lus10027084.g ID=Lus10027084.BGIv1.0 annot-version=v1.0 ATGGAAGGGAGCTCAGAGTGCAATTTGGTGCTATGTGGGAAGTCATCAGTGGAGAATGAAGTCGCTGATTCTCTGAAGAAGAACAATACTATTAAGCTTC CTGACAGTGGTGACATATCTGTGTTGTTGAAACCAGAAGCTGATAAGCTTTACGAAAAGGATAAGTCTTTTGATGCGGGGCTTTACATGAATAGCCTTTC AACGCTGCGATTCGGACGTCTTTTGATTTGGTCTCCCTTGTTATCTTCCACTCATGAGGTCGTCTCCCGCAACTTTAGTGAGCTTCCGATTGGCACAGTT TGTGTTGCAGACGCGCAATGTAAAGGACGAGGCCGATCAAAGAATGTTTGGGATTCTCCTGTCGGTTGCTTGTTGTTTTCATTCACGATTGAAATGGAAG ATGGAAGAGCGGTGCCTTTGTTGCAGTATTTAGTCTCTCTTGCTGTTACAGAGGCAATTAGGGACCTTTGCAGTGAGAAAGGCTTACCGTATATTGACAC TAGAATAAAATGGCCGAATGACATTTACTTGAATGGTCTCAAAGTTGGGGGTATCTTGTGCACATCAACTTACAGATCAAAGAAGTTCAATATCAGTGCA GGTATTGGATTGAATGTTGACAATGATAAACCAACAACATGCTTAAATATGGTCCTAAGAGCAATGTCCCATGATGGTTGTCGCTTAACACGAGAGGAAA TGTTGGCTTCATTCTTTAACAAATTCGAGGAACTTTACGATGTGTTTATAAACCAAGGATTTGGACCTCTGGAGAAACTCTACTACGGATCATGGCTGCA CAGCGGGCAAAGAGTAATTATTCAAGAAAATGACAGCAATCAAGCTAAGGAGAGTGTTGTAACAGTTCAGGGCTTGACGTCGTCAGGGTACTTGTTGGCA ATGGGTGAAGACAATCAAATGTACGAACTTCATCCAGATGGAAACAGTTTCGACTTCTTCAAAGGATTGGTTAGAAGGAAACTTGAATGA
AA sequence Show only first row Show all	>Lus10027084 pacid=23151601 polypeptide=Lus10027084 locus=Lus10027084.g ID=Lus10027084.BGIv1.0 annot-version=v1.0 MEGSSECNLVLCGKSSVENEVADSLKKNNTIKLPDSGDISVLLKPEADKLYEKDKSFDAGLYMNSLSTLRFGRLLIWSPLLSSTHEVVSRNFSELPIGTV CVADAQCKGRGRSKNVWDSPVGCLLFSFTIEMEDGRAVPLLQYLVSLAVTEAIRDLCSEKGLPYIDTRIKWPNDIYLNGLKVGGILCTSTYRSKKFNISA GIGLNVDNDKPTTCLNMVLRAMSHDGCRLTREEMLASFFNKFEELYDVFINQGFGPLEKLYYGSWLHSGQRVIIQENDSNQAKESVVTVQGLTSSGYLLA MGEDNQMYELHPDGNSFDFFKGLVRRKLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	0	1
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	1.0	0.8864
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	3.2	0.8773
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	3.9	0.8222
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	7.4	0.8459
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	8.5	0.8577
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	11.4	0.8580
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	14.0	0.7397
AT4G08310			unknown protein		Lus10003736 [exp]	15.3	0.8456
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	15.5	0.8170
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	18.0	0.8247

Compare expression of checked genes

Lus10027084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.