Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66980 273 / 6e-84 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 265 / 6e-84 Protein kinase superfamily protein (.1) AT1G70250 267 / 1e-83 receptor serine/threonine kinase, putative (.1) AT1G66910 263 / 2e-83 Protein kinase superfamily protein (.1) AT5G38250 261 / 2e-83 Protein kinase family protein (.1) AT1G66920 262 / 3e-83 Protein kinase superfamily protein (.1.2) AT1G66930 261 / 3e-82 Protein kinase superfamily protein (.1) AT5G39030 263 / 8e-82 Protein kinase superfamily protein (.1) AT1G67000 263 / 1e-81 Protein kinase superfamily protein (.1) AT5G39020 262 / 1e-81 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008335 [exp] 497 / 3e-173 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 471 / 5e-169 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 480 / 1e-168 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 414 / 1e-141 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10025549 [exp] 379 / 6e-134 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027116 [exp] 365 / 2e-128 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1) Lus10027119 [exp] 353 / 3e-119 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025544 [exp] 339 / 7e-115 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10008362 [exp] 336 / 5e-113 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 370 / 5e-129 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 350 / 4e-117 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125450 [exp] 349 / 2e-116 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 344 / 2e-114 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 340 / 6e-113 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 330 / 8e-113 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 338 / 7e-112 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 338 / 8e-112 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G125200 [exp] 332 / 8e-112 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 338 / 1e-111 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027085 pacid=23151540 polypeptide=Lus10027085 locus=Lus10027085.g ID=Lus10027085.BGIv1.0 annot-version=v1.0 ATGCTTGGAAAGTCCACAGCTGGAGGACTCCAAGACTTTATTAACGAAGTTGCTACCATTGGAACGATTCACCATGCTAATGTGGTAAGACTTATCGGTT TTTGTTCTGAAGGATCGAAGCGTGCTCTCGTTTACGAGTTCATGCCAAATGGTTCCCTTGACAAGTACATCTTTCGCAAGAATCAAGGATACAGAACTTT GAGCATTCAACAACTGTATCGCATCTCTATCGGAGTGGCTCACGGGATTGGATATTTGCACAGCGGGTGCGCCATGCAGATTCTGCATTTCGACATCAAG CCCCACAACGTTCTTCTTGATGACAACTTTAATCTGAAATTTTCAGACTTTGGGTTGGCTAGGCTATATTATGCAGGTGATAGAGTTGCAACTCTAACTG CAGCAAGGAGAACCATCGGGTACATAGCGCCAGAGCTATTCTACAGGAACATCGGAAGTGTCTCCTACAAAGCTGATGTCTATAGCTTTGGGATGTTACT GTTGGACGTGGCAGAGAAAAGGAATAACTTGAATGCTGCAACAAGTCATTCGAGTCAAGTTTACTTCCCGTTCTGGGTTCATGATCAAGTTGTGTCCCCA CCTGGAACTCCTATTGCAGTTGCAGATGATGCTGTAAGGGAAGAAGAGAATGAGACTGCAAAGAAGATGGTGATTGTAGGGTTGTGGTGCATCCAGACGA ATCCTGAGAGTCGTCCTCCTATGAACAAAGTGGTGGAGATGCTTGAAGGAGAGCTGGAAAACATACCACTGCCTACCAAACCTGTGTTTTATGCTGGAGA ATCTGTAGGAAACATTGAAGAAGGATCATTGTCGTCGTCTTTCGGGTCATCGCAGTATACAAAATCTATCGGTGACTGA
AA sequence Show only first row Show all	>Lus10027085 pacid=23151540 polypeptide=Lus10027085 locus=Lus10027085.g ID=Lus10027085.BGIv1.0 annot-version=v1.0 MLGKSTAGGLQDFINEVATIGTIHHANVVRLIGFCSEGSKRALVYEFMPNGSLDKYIFRKNQGYRTLSIQQLYRISIGVAHGIGYLHSGCAMQILHFDIK PHNVLLDDNFNLKFSDFGLARLYYAGDRVATLTAARRTIGYIAPELFYRNIGSVSYKADVYSFGMLLLDVAEKRNNLNAATSHSSQVYFPFWVHDQVVSP PGTPIAVADDAVREEENETAKKMVIVGLWCIQTNPESRPPMNKVVEMLEGELENIPLPTKPVFYAGESVGNIEEGSLSSSFGSSQYTKSIGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027085 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	5.2	0.8831
AT5G47090			unknown protein		Lus10021704 [exp]	5.3	0.8624
					Lus10017219 [exp]	5.7	0.8507
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	13.0	0.8213
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	13.2	0.8485
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	14.3	0.8490
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	16.6	0.8483
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	17.7	0.8478
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	18.2	0.8449
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	18.6	0.8302

Compare expression of checked genes

Lus10027085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.