Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43940 164 / 2e-46 ATHOL3, HOL3 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43920 148 / 5e-41 ATHOL2, HOL2 HARMLESS TO OZONE LAYER 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G43910 141 / 5e-38 ATHOL1, HOL1, HOL HARMLESS TO OZONE LAYER 1 (.1.2.3) AT5G23450 102 / 2e-22 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT5G19330 94 / 1e-19 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G27550 91 / 1e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 69 / 1e-11 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G09170 63 / 5e-10 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 63 / 6e-10 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G10310 62 / 1e-09 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042337 [exp] 410 / 2e-138 AT5G41310 96 / 1e-21 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10008335 [exp] 304 / 4e-93 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10029914 [exp] 105 / 4e-23 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004487 [exp] 103 / 2e-22 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034070 [exp] 100 / 2e-21 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010161 [exp] 99 / 3e-21 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10017366 [exp] 99 / 3e-21 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10010527 [exp] 98 / 6e-21 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010600 [exp] 81 / 2e-17 AT3G27050 61 / 8e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007000 [exp] 186 / 3e-54 AT2G43940 295 / 8e-102 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G031500 [exp] 108 / 9e-25 AT5G27550 378 / 7e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G090900 [exp] 97 / 1e-20 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G002100 [exp] 95 / 6e-20 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.010G255600 [exp] 94 / 1e-19 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.008G150100 [exp] 92 / 4e-19 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G030271 [exp] 91 / 1e-18 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 91 / 2e-18 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G210000 [exp] 77 / 3e-14 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 73 / 4e-13 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0063 [flax] [poplar] NADP_Rossmann PF05724 [flax] [poplar] TPMT Thiopurine S-methyltransferase (TPMT) CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10027086 pacid=23151615 polypeptide=Lus10027086 locus=Lus10027086.g ID=Lus10027086.BGIv1.0 annot-version=v1.0 ATGCTGCGGTTTTTTTCATCTCCCCGCACCATCATTCCCTCTCTCCGACCGCTATCTTACTCCTGTCGCCGAGCTGCGTATTATCTTCACACCACCGGTT TACCAATGGAGAAGAAGAATCAGGGTATCGCTGCCGAAGGAGACGGAACTGCCGGTACCACTACTCCCAACTTCAAACCTGAAGTCAATGACATGCAACG CCTCCTCACCGATCACTCTTCCGGTGGTTGGGACAAGTGCTGGGAGCAAGGACTGATCCCATGGGACTTGGGACGAACCACTCCAGTTATCTTGCATCTT CTTCAGGCAGGAACCCTACCTAAGGGCAGAGCTCTGGTTCCTGGATGTGGCACTGGTTATGAGGTGGTGGCCATGGCATTCCCTGAATGTTTTGTGGTTG GATTGGAAATCTCCGACAAAGCAATTGAGAAAGCAAACCAGTTATGCATTCTTTTCGATAATTTTCTCCATGGTTCAAGACAGTTGTTTTCAACTCTGCC AAATTCATACCACTTCACTTTCGTCAAGGCAGACTTCTTCAACTGGAATCCATCGGAGAAGTTCGATTTGATTTTTGATTATACGATTCTGGATGATGTT GATTCCCAAACACTTGCATCTAGAGTTAACATCAGCTATTGTCCTGATGAGATTATATGTGTGGGTGGTGATGGAATTATCAATGAGGCAGTGAATGGGT TGCTTACTAAAGAGAACGAGAAAGAAGACATCTTCATTCCTATTGCAATTATACATGTTGGTTCTGATAGTTCACTTGTTTGGACTGTTTTGGGGGTAAA TGACCCTATTTCTGCTTTCATGGCTACTATAATGGTTGATTGCGTGTTCAAGGTTGAGGAAAGGAAACTTACTGGTGACGGTGTAGCTGACGAGTTTCCC AACAAGGAGTTACAATCCTGGAATCAACAGGTTGACAAGCTGGCACATGAGCTGCAAAAGCTACAGTTAAGGCGGGGTTTTGAATTGTTAGACAGCCATG TTAAGGAGCTCATATCTTGTCAATGTTTTGGCTGTCTTGATGTTGTTTCCCATGGGAGAGGCAACTTTCCGAACCATAAAGAACCTTATAAGGATTTCGG TGCAGCGAGAGTGGAAAGAGAGCTTAGCAGGTTGTCTATAGGATTCAAACTGCAAAGACATTGGAGTATTCTCATTGTTGCTGGAGTTGTGGCAGCCAAT GGGAGCAATTCGAGTAACGTTGCTGCTGAAATTGTATCTGTTTCACATTTCCATGATTGTTGGATGGTGCATCTAGATCTTGAGCCTGGAACTATTCTCT CGAGTGTCGAAGGATACGTTGAGCTAGTTGATTTTGCAAAGGAGATGGATGAATACAGTAGGTTTAATTCAGTTTGTAGGACTGCTGAAGACAGGGTTTC GAAAAATATATTCTCTAACGGCTACAATATCAGCATATTTGCCTATAGCCAAGCTGTAACTGGCAAGACATGTACAATGGAAGGCACACTTGACAATAGA GGAGTGAACTACAAAACTGAGGAAGTACATAAGCTGCTCAAATCTAGAAACTGCATACGATCTGTCGGTTCTACGAGTGCCAAAGAGCAAAGCAGCCGCT CTCACTGTTTGTTACTAGTGACGGTCAAAGGACGGAATTTGATCGAGGGGCAGAAAACAAGAAACCACCTTTGGCTTGTGGACTTAGCTAGAAGTAAGCG TGTTGAAATTTATTCAAACACGAAGCAACAACTCGATGGAACTATTGCTTTGTACAAGTTGGCCAACAAAGCAATTATACTTTCTCCTATGCATGCATTT CCACCTTCTCCAATTCCACATGTCTATTTCGGGGAGCAGTGTGTGAACAATGCTACGCTATCCGACGTAAGCTTCCTCGTTGAAGGGAGAGACAACCACT TATGTCGGTACAAGTTGGTTTTTGCTTTGGATTTAAGGGTAGTGGTTTTCGTAGTTACCCTCCCAACCACCCTCAATTCAGCTTATTTTTGTTTACTTAT CGACTTGGGGACAAGCCGAATCTCACCGGAGGGGGAGAGGAGGAGTATGGGAAGGAAGAGACGAAGAGATTAA
AA sequence Show only first row Show all	>Lus10027086 pacid=23151615 polypeptide=Lus10027086 locus=Lus10027086.g ID=Lus10027086.BGIv1.0 annot-version=v1.0 MLRFFSSPRTIIPSLRPLSYSCRRAAYYLHTTGLPMEKKNQGIAAEGDGTAGTTTPNFKPEVNDMQRLLTDHSSGGWDKCWEQGLIPWDLGRTTPVILHL LQAGTLPKGRALVPGCGTGYEVVAMAFPECFVVGLEISDKAIEKANQLCILFDNFLHGSRQLFSTLPNSYHFTFVKADFFNWNPSEKFDLIFDYTILDDV DSQTLASRVNISYCPDEIICVGGDGIINEAVNGLLTKENEKEDIFIPIAIIHVGSDSSLVWTVLGVNDPISAFMATIMVDCVFKVEERKLTGDGVADEFP NKELQSWNQQVDKLAHELQKLQLRRGFELLDSHVKELISCQCFGCLDVVSHGRGNFPNHKEPYKDFGAARVERELSRLSIGFKLQRHWSILIVAGVVAAN GSNSSNVAAEIVSVSHFHDCWMVHLDLEPGTILSSVEGYVELVDFAKEMDEYSRFNSVCRTAEDRVSKNIFSNGYNISIFAYSQAVTGKTCTMEGTLDNR GVNYKTEEVHKLLKSRNCIRSVGSTSAKEQSSRSHCLLLVTVKGRNLIEGQKTRNHLWLVDLARSKRVEIYSNTKQQLDGTIALYKLANKAIILSPMHAF PPSPIPHVYFGEQCVNNATLSDVSFLVEGRDNHLCRYKLVFALDLRVVVFVVTLPTTLNSAYFCLLIDLGTSRISPEGERRSMGRKRRRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Lus10027086 [exp]	0	1
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	2.2	0.8794
AT2G17787			unknown protein		Lus10013567 [exp]	3.0	0.8989
AT1G45150			unknown protein		Lus10002387 [exp]	6.5	0.8768
AT1G25210		AtLpxC5	lipid X C5, UDP-3-O-acyl N-ace...		Lus10021282 [exp]	7.2	0.8537
					Lus10014678 [exp]	10.8	0.8876
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	11.9	0.8937
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	13.5	0.8663
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	14.7	0.8806
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	14.7	0.8691
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	16.2	0.8496

Compare expression of checked genes

Lus10027086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.