Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26455 113 / 1e-26 WIP1 WPP domain interacting protein 1 (.1) AT5G56210 102 / 9e-23 WIP2 WPP domain interacting protein 2 (.1) AT3G13360 93 / 6e-20 WIP3 WPP domain interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008336 [exp] 926 / 0 AT4G26455 142 / 2e-36 WPP domain interacting protein 1 (.1) Lus10002005 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472000 [exp] 285 / 4e-88 AT4G26455 194 / 1e-54 WPP domain interacting protein 1 (.1) Potri.011G169000 [exp] 268 / 2e-81 AT5G56210 181 / 8e-50 WPP domain interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027087 pacid=23151591 polypeptide=Lus10027087 locus=Lus10027087.g ID=Lus10027087.BGIv1.0 annot-version=v1.0 ATGGATTTGCTGGATAAATCTGCTACTGCTCTTGATTTTGTGGTGGAGGGTGAATTGGCTACCAGTGTCACCAGCAGCAGATCTCCTCGGAGTGTTGATG GCAATGGAAAACTCGAGGCTAATGGATCGTGTGTGGATGCGATCCCCAGCTTTGAAGCTGGCGAAGATGTTAGCAGCATTACGCCGTTAGGGAGCAAGGA AGTGGTGGGTTCATCGGATTCATCTCCTGCTGCAGGGTCGTCTTCTCCTGCAATCAAAGGGTACGGTCTGAAGAAATGGAGACGGATTAGGAGGGATGTA CTTAAGGATACTAGTGGCGTAGCAGATAGTAGCAAACCTGTGAAGAGGGGTTTATCAGGGGCTGGAGCTTCAGTCAGGTTGGTGAATAGGGGATCAGTGG AGAATAATAGGGAAGCTAGTGATGTTTTTGTTGGCCCAAGTTTTGGCTATGAGAACGGTGTTCCTGAATCTAGTTCGGATTCTAGGTTTGCGGTTGGTTC TGCTTTTACCACTGGTGCCGACTCGGAGAATAGTGTTAGCGAGGACCGAAGTAGTAAGTCCTCAACAGCGGCAAGTGCTCCAAGATCAAGGAATGACCTT GGTGGTGGATCCGGGTATGGGACGGAGAATCAAAGAATCAAATCTTACCCTGTAAAGGTTGTTGGAAGTTCAGTTCAACGGGGTCAACAAGGGAAGGGGA ATGTGGAGAGTAGTAAGAAGGCTAGAGGAGAGAGGGCCAAGATTGAGAAACAAAGCTCTCATTCCAGTATGGAATCTGATTCAAGAAGCTCTAACTTTGT TTTCAGTCAGGGACTCTATTCAGCTACCAGCAATGGGAAGCAGAGTGAAATGTCAATGAATGATGATGGTGAAGCACATGGTTGTGAGGAACAAGATATT GAGGAACTTCAGACTAGGTATGATCATGAGACTGTTGACGAAGTTGGAGATCATTCTCATGATGATTCGGCTGTTCATGCATCATCTCATAGTAAAGGAG AAAAAAATGAGAGTAACGATTCTTCAACGGAGAAGGATCCCTTGGTTGAATCTCTGATTTTGCTCCAGTCTGTGCAGGAAGCCCTTGAAAGTGAGATCAA CAAATTTGGAGAGATTGGGAAGATCAGCTGTCCTACAGATCCCCCTTACACAGACGCAACTGCGTCAAGCTCATTCGGTCAGTTTGAAGCAGGAGCGGTT GAGCAAGTATCGATGCCATTCCAAAATGCAAAACATCTAGAAAACAGACTGAAGGAAGTGCTGACAATGGTGTGCTCGAAAGAGGCCAAGGTTGCCGAAC TAGAAGAAAAGTGGAAGCGTGGTGAGTCAGATAACAGAGAGCTAGAGGCAGACTTCAAAATTCGATCAGAGGAGATGGAGATCGAGTGCGAGGCCCTCTT CGAGCAGAAGATCGAGGCCGAGGTCCAATGTCTGACGTTGAGAAAGACATTGCAGGAGTCGAACGCCAATGAAAGCAACCACGGAGAACCACTTTATGCC GAAATTAAAGCTGTAATTGGGGAGCAGGAGCAAATGCGGCAGAAAGTGAGTTTGGTGGAGAGCAAGGCCATGGCTATCAAGAAGGGTGCAGAGAAAGTGA CGAAGCACCGAGGGGAAGTACTCGACGTTGAAGAAGAAGAGGGGTCAAATATTCGGAAGGGGATACGTAAAACGGTGACGTGTTTCTTGATCCAGTTGAT GCTGCTTCTGGTCTTGGTTCTGGAGATGTCTACCCAGAATGGAGTTGTTGTAGTACCCACATGA
AA sequence Show only first row Show all	>Lus10027087 pacid=23151591 polypeptide=Lus10027087 locus=Lus10027087.g ID=Lus10027087.BGIv1.0 annot-version=v1.0 MDLLDKSATALDFVVEGELATSVTSSRSPRSVDGNGKLEANGSCVDAIPSFEAGEDVSSITPLGSKEVVGSSDSSPAAGSSSPAIKGYGLKKWRRIRRDV LKDTSGVADSSKPVKRGLSGAGASVRLVNRGSVENNREASDVFVGPSFGYENGVPESSSDSRFAVGSAFTTGADSENSVSEDRSSKSSTAASAPRSRNDL GGGSGYGTENQRIKSYPVKVVGSSVQRGQQGKGNVESSKKARGERAKIEKQSSHSSMESDSRSSNFVFSQGLYSATSNGKQSEMSMNDDGEAHGCEEQDI EELQTRYDHETVDEVGDHSHDDSAVHASSHSKGEKNESNDSSTEKDPLVESLILLQSVQEALESEINKFGEIGKISCPTDPPYTDATASSSFGQFEAGAV EQVSMPFQNAKHLENRLKEVLTMVCSKEAKVAELEEKWKRGESDNRELEADFKIRSEEMEIECEALFEQKIEAEVQCLTLRKTLQESNANESNHGEPLYA EIKAVIGEQEQMRQKVSLVESKAMAIKKGAEKVTKHRGEVLDVEEEEGSNIRKGIRKTVTCFLIQLMLLLVLVLEMSTQNGVVVVPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	0	1
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	9.8	0.7492
AT4G35320			unknown protein		Lus10022985 [exp]	11.3	0.7302
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	13.1	0.7160
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	13.8	0.6882
AT3G49720			unknown protein		Lus10011564 [exp]	15.4	0.7215
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	18.7	0.7142
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	21.2	0.6863
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	23.7	0.6665
AT4G22990			Major Facilitator Superfamily ...		Lus10002956 [exp]	30.6	0.7042
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10033478 [exp]	33.4	0.6930

Compare expression of checked genes

Lus10027087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.