Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26450 118 / 2e-29 WIP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008342 [exp] 543 / 0 AT4G26450 211 / 6e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472600 [exp] 280 / 2e-88 AT4G26450 328 / 6e-102 unknown protein Potri.011G169200 [exp] 275 / 1e-86 AT4G26450 323 / 3e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027095 pacid=23151572 polypeptide=Lus10027095 locus=Lus10027095.g ID=Lus10027095.BGIv1.0 annot-version=v1.0 ATGCAGTCGGTTGAGGATGACAAAGTCGCTTTGATATATGGATCAGAGCATGGTAAGTGTGTAAGGTCTCACTCGTTTCCAGATGGAGCTTTTGAGATTG AAAGTGAGTTTGAAACAAGTAATGAGACAGCGACATTTGCAAGGTCTAGCTCGGTTAAGGAAAGAGGTGAGAAGCGTCCTGCAGGAAATAGTGATACTAG TCAACAACAGAAGAAAGCTAGAGAGAGTCTGTCAACCATAGTTCCTGGGAGTAATACTTCAACAGAAAATATTATGACCTCAAATGAGGTGGCTCCTTTG ATTCCTGTTACTGTGGGGATCAGTTGTGATTTGCCAGAGGATATCACTGCTTCACACGAAGGATATCCTCTACAAAAACATCATTCTCCTGGTTCATTCA AGATATGTGACTTAAACCTGATGGGAGTTTCTGATATACATGACAGTCAGAACAATGAAATAGTTCTTAGGTATCCACCTGCTGCCAAAAAAGAAGCTAT GAATGTTGATGATGACTTGTCGATTAGTAATGCGAAGATGCCTATTGAATATGTTGGGCATGTCAATGGTGGCAAGGAGATTGAAGTGATTGACTTGGAG AATGATTCCCTTCCAGAGAATGAGGCGGTTGACAATTCGCAGACAAAGACTGAGGTTGCATTTAGTGGACCAGAAGGCTTTTCCAGCAATGTGCAAGTAG GTGGTCAGATAAGTGATGTCCCGGATGAGTATGATGGGCTTACAATCTCAGAGTTCCTCAACAGTTTTTCAAATTGTACATCGGTAGCTGAAGGGATAAA CCCTCTGCAGAATGAAATTGGCCTGCACCATGCGGAGGGAACTCTTGGATACGATGACTCAATTTACACATCCCTCGAAGAAATACCATTAAGTTTTATA CCAGACTGGGAGCAGCCAGCACCACAGGAGTTCGAAAAGCCATTCTGA
AA sequence Show only first row Show all	>Lus10027095 pacid=23151572 polypeptide=Lus10027095 locus=Lus10027095.g ID=Lus10027095.BGIv1.0 annot-version=v1.0 MQSVEDDKVALIYGSEHGKCVRSHSFPDGAFEIESEFETSNETATFARSSSVKERGEKRPAGNSDTSQQQKKARESLSTIVPGSNTSTENIMTSNEVAPL IPVTVGISCDLPEDITASHEGYPLQKHHSPGSFKICDLNLMGVSDIHDSQNNEIVLRYPPAAKKEAMNVDDDLSISNAKMPIEYVGHVNGGKEIEVIDLE NDSLPENEAVDNSQTKTEVAFSGPEGFSSNVQVGGQISDVPDEYDGLTISEFLNSFSNCTSVAEGINPLQNEIGLHHAEGTLGYDDSIYTSLEEIPLSFI PDWEQPAPQEFEKPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	6.3	0.7258
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	6.6	0.7436
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10034049 [exp]	9.6	0.7275
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	10.7	0.7327
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	19.3	0.7216
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	19.4	0.7274
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	19.9	0.7054
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	20.5	0.7037
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	23.2	0.7252
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	23.7	0.6637

Compare expression of checked genes

Lus10027095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.