Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26450 78 / 1e-15 WIP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008342 [exp] 472 / 5e-163 AT4G26450 211 / 6e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169200 [exp] 229 / 3e-69 AT4G26450 323 / 3e-100 unknown protein Potri.001G472600 [exp] 223 / 1e-66 AT4G26450 328 / 6e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027096 pacid=23151619 polypeptide=Lus10027096 locus=Lus10027096.g ID=Lus10027096.BGIv1.0 annot-version=v1.0 ATGCACCACCCTAGACATCGTAGTCCTGGAAATGGTTACAGGTCTTCTGGCTCCATGGGGATGGGCTTTGGCGGCTCAAGAGTACCCCAAGAGGGTGGAG GTAGGGGTGGTCCCGGATTTTACAACTCTGAGTACAGAGGATTTCGGAATCGAGGTTTCGGCCGTGGTCATGGCCAACAAAAACCTTTCCAACAACAACA ATCACACCGTTTGCCACCGAGGAAAGAAGATATTATGATGGAAGCTGGTAGGCTTGCTGCTGAGTATCTAGTTTCGAAAGGGTTGTTACCTCAGGCTGCA CTTTCTGGCAAGTGGCAGAATGGTAGTTTGAAGAATCTGGCTGGAGATTATCAAGACTTCAGACAACAAGAGGCCCCAGTTCAAGATAGCAGGGTATCTG CCCATTCACGCCTAGGTGGTGGTCATTCTGATGCTGGTTCGGGTGAAAGAAGATACAGCGATGAGTTCAATTCTCGAAATCAACCTAGAGGACGGAGAAG GGGAGAATATCACCGCAATTACAGTTCTGAGTTGGTCAGAGACTCTGGGCGGAGTAGCTCTGGGTCGGAGAGAAATAGGGAGTCTCCAGAAGAGGAGGGG CATGATGATAGTAGCGGGCGTTATGAAGTGCAACAAGGCAGTAAAAGAGCAGATGACAAAATGCAGGTTTCAGATCGTAATGCCAGCATAGGACGGGAAA AAGTGGAGCCAGCTGATGTGGAATCAAGAATCAAGAAATGTGATATTTCGGACGATTTGGGCTCGAAAGCAAGCTTGTCTAGTGTTGCGGAAGAGAAGGC TGATGGCGAAATCGCTAAGGGGTCTGAAGATCCAGCAGACTTGAATCCTGAGAATAAAGAGCAGGAGGTATTAAATAATGATGAAAGCGAGGAACAAACT GTTCCTGAGGACTCACTATCCAAACGTTCATTGACGGAGGATGATCTATCAACCAAGAATGGATCTGATTTGATCCGTGAATCCCCTAGTGGCTGTTGGG GGGATCAGCGAAATGAATGA
AA sequence Show only first row Show all	>Lus10027096 pacid=23151619 polypeptide=Lus10027096 locus=Lus10027096.g ID=Lus10027096.BGIv1.0 annot-version=v1.0 MHHPRHRSPGNGYRSSGSMGMGFGGSRVPQEGGGRGGPGFYNSEYRGFRNRGFGRGHGQQKPFQQQQSHRLPPRKEDIMMEAGRLAAEYLVSKGLLPQAA LSGKWQNGSLKNLAGDYQDFRQQEAPVQDSRVSAHSRLGGGHSDAGSGERRYSDEFNSRNQPRGRRRGEYHRNYSSELVRDSGRSSSGSERNRESPEEEG HDDSSGRYEVQQGSKRADDKMQVSDRNASIGREKVEPADVESRIKKCDISDDLGSKASLSSVAEEKADGEIAKGSEDPADLNPENKEQEVLNNDESEEQT VPEDSLSKRSLTEDDLSTKNGSDLIRESPSGCWGDQRNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	0	1
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	1.0	0.9113
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10025531 [exp]	5.2	0.8908
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	5.7	0.8956
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	7.1	0.9095
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	9.2	0.8814
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	10.8	0.8984
AT2G40070			unknown protein		Lus10011374 [exp]	13.7	0.8667
AT1G79090			unknown protein		Lus10031210 [exp]	13.8	0.8738
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	14.7	0.8826
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	15.5	0.8639

Compare expression of checked genes

Lus10027096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.