Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56240 160 / 5e-42 unknown protein AT5G56250 131 / 2e-32 HAP8 hapless 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008344 [exp] 660 / 0 AT5G56240 175 / 3e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472400 [exp] 342 / 1e-104 AT5G56250 203 / 8e-54 hapless 8 (.1.2) Potri.011G169100 [exp] 340 / 4e-104 AT5G56250 177 / 2e-45 hapless 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027098 pacid=23151525 polypeptide=Lus10027098 locus=Lus10027098.g ID=Lus10027098.BGIv1.0 annot-version=v1.0 ATGTTATTATCTATTGAAAACCCTCCACCAGATCCCACTACTCATGATGTCTCTTCTTCCCAGTTTTCACACCTCCCTTCTACTTCTCATGATCTGATCC CCACAACCACAACAACTCCCCCTTCTCCTTCTTCCTCTTCCACTTCTTCTCCTTCAAAGCCTTTGCTGCCATCTCCTGAGCTACTACAGCCAGATCTACC AAACCCACCACCTCTTGATCATCAAAACCCACTTCCCAGTTTCTCCATAAGAGATTATGTGTTCGCGGCTCGAAGCAAGAACATCAAAACGAATTGGCCG TTCTCTTCGAAAAGCTTGCAACTTTGTTTGAAACATGGCGTGAAAGATGTGCTGCCACCGTTTCAGTCTCTTGGTATTGTGAGAAAACAAAGTTTTGGCA GATGTACGGTTGGCCCTACTGTAGTTAATCAGAAGCAAAAGTCGCATAAGTTTGTGGACAAGCTCAGCAAGTCTGCTGATAATGGTGGGGTGATAGAATC AGCAGCGGATGATATTCCCTCTGGTACTGTTAATTTAGTAGAAAATCGAGTAGACATAAGTTCATGTGGATTTGGAGGAGATGATTTCCCATGCACAACA ACTAGTGTATCTCAATCTGATATAGACTCAGTGCCTAAGCACTTCCGGTCGAACTTGGTACCAGAAACCGAGACATCAGTGAAAGCCTTAGCCGGAGTTG GTGCTGGTGGAGGACCTTCTTTGACGCACAAGACTGAGACCGCCTCACGGCAACCAAACAAGAAGTGTAAGTTGATAGTAAAATTTGGTGGCAACTCCGG TCGTAGCTCGGTAGAAGATATTGCTTCAACAAGTACACCTATATCAGAATCAATGGCTTCGAAAATTTGCCCAGTCTGCAAAACGTTTTCTTCCTCATCG AACACCACTCTAAATGCTCACATTGATCAATGCCTTGCGGTGGAGACGACACCTAAATGGACAGAAGACTCGAGGACAACTAAATCTAAAGTAAAGCCAA GGAGAATAAGGTTGATGCTGGACATATATAAGACAGCTCCTCGGTGCACATTGGAAGAGCTTGACCGACGAAACGGTAGAACTTGGGCTGCTGATTCAAG CTTGCCAACGGAGGAGACTGATAGGAATAAGACATCTAATAAGGAAGGTAAAAGGGAGAAGGTGACACAAGTGCTTGCTGAGAAGCATGTAAATGCTGAT GCTGTTGGCCCGGTTTATATTGATGCAAATGGCACCAAGGTTAGGATTTTATCAAAGTCAACCGACATTATTACTCCAGTGGCTAAAGTAGGGGAGGGTG GTGGAGGGAAGAAACTGCTGAAAGGAGGCACAAGAAGCAAATACATGGCTATGAAGAAGAGAAAACACAAGCACAAGAAATATCTGAAGCTTGCTGCACA AAGCAAAAAGCTTTTCTCGCAAAAGACTCGTGGTTCGGAGGTAAATTTCCCTTGCATTACATGCATGGTTCTGGTTCTCTCATAA
AA sequence Show only first row Show all	>Lus10027098 pacid=23151525 polypeptide=Lus10027098 locus=Lus10027098.g ID=Lus10027098.BGIv1.0 annot-version=v1.0 MLLSIENPPPDPTTHDVSSSQFSHLPSTSHDLIPTTTTTPPSPSSSSTSSPSKPLLPSPELLQPDLPNPPPLDHQNPLPSFSIRDYVFAARSKNIKTNWP FSSKSLQLCLKHGVKDVLPPFQSLGIVRKQSFGRCTVGPTVVNQKQKSHKFVDKLSKSADNGGVIESAADDIPSGTVNLVENRVDISSCGFGGDDFPCTT TSVSQSDIDSVPKHFRSNLVPETETSVKALAGVGAGGGPSLTHKTETASRQPNKKCKLIVKFGGNSGRSSVEDIASTSTPISESMASKICPVCKTFSSSS NTTLNAHIDQCLAVETTPKWTEDSRTTKSKVKPRRIRLMLDIYKTAPRCTLEELDRRNGRTWAADSSLPTEETDRNKTSNKEGKREKVTQVLAEKHVNAD AVGPVYIDANGTKVRILSKSTDIITPVAKVGEGGGGKKLLKGGTRSKYMAMKKRKHKHKKYLKLAAQSKKLFSQKTRGSEVNFPCITCMVLVLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56250		HAP8	hapless 8 (.1.2)		Lus10027098 [exp]	0	1
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	7.9	0.9096
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	9.5	0.8597
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036197 [exp]	12.0	0.8807
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	14.5	0.9063
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	17.0	0.9031
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	20.8	0.8623
AT1G58230			binding (.1)		Lus10028167 [exp]	21.6	0.8931
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10038725 [exp]	22.0	0.8489
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	27.8	0.8801
AT1G58230			binding (.1)		Lus10042867 [exp]	28.5	0.8891

Compare expression of checked genes

Lus10027098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.