Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13230 373 / 5e-131 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008345 [exp] 447 / 6e-160 AT3G13230 373 / 3e-133 RNA-binding KH domain-containing protein (.1) Lus10003510 [exp] 56 / 2e-08 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10009488 [exp] 54 / 1e-07 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10025489 [exp] 44 / 1e-05 ND 53 / 2e-13 Lus10035769 [exp] 47 / 2e-05 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166000 [exp] 392 / 2e-138 AT3G13230 368 / 2e-131 RNA-binding KH domain-containing protein (.1) Potri.001G469200 [exp] 387 / 3e-136 AT3G13230 367 / 1e-130 RNA-binding KH domain-containing protein (.1) Potri.019G077500 [exp] 48 / 6e-06 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10027099 pacid=23151535 polypeptide=Lus10027099 locus=Lus10027099.g ID=Lus10027099.BGIv1.0 annot-version=v1.0 ATGCTTCCAGACGCTGTAAACACTCCAGCGACGACTGCAGCGGCGAAAAAGCGAAACGTCGACCTAAGCCCCACTTTACAGCAGGCCACGGCATTTGCCT CCTTCATCTCTTCTCTGATCGGGTCAATTGATCTCTTTCCAACCCGGGAAGTCCAGGAACAGTCAGAATCAGAAGGGCATTCTCGTGCTTATATTGATTT CAAAAGCCCTGGAGATGTGATGGTGTTTGCACAGTACTTCAATGAGGAGGATGATGCATCCTCCTCGCATAAAGCTAAGAGTAAGCCTTCGAGAAATGGA GTTGCAACTGGAAATCCTGATTCTAAGCAGCCGCCGTCGTCTTCACCGTCTTCGCTTCCAAGAACAAAACCTACGGCACCTCACCTTACTATAGGCGGCG GCTCCGTCCGAAAGAAAAACCTATCACCAGCAATGCAGTCTGATTCCATGGAAATCGAAACCCTAACCAACGGAGGGGCTGAAGCTTCTTTGCCTGCAAA GCCTCAGTTCGAGCCACTGAAGGCTCACGAGATGTCTGACGGGAAGGTACAGTTCAGGAAAGTCTCAGTTCCGCCTCACCGATACACTCCATTGAAGAAG GCATGGCTGGATATCTACACTCCAGTATACGACCAGATGAAAGTAGACATCCGTATGAACCTCAAAGCCAGAAAGGTTGAGTTGAAAACCCGAGCCGACA CCCCTGACATTAGTAACCTGCAAAAGTCTGCTGATTTCGTCCAGGCGTTCATGTTCGGGTTCGACGTCATAGACGCGGTTGCCCTGCTTCGGATGGACGA GCTTTATGTCGACACTTTCGAGATCAAGGATGTGAAGACTCTCCACGGGGAGCATCTGTCTCGGGCGATCGGTAGGCTGTCGGGGAAAGGAGGGAAGACC AAGTTTGCGATTGAGAATGCTACCAAGACTAGGATTGTGATTGCTGATAAGAAGATTCATGTGTTGGGGTCGTTTCAGAACATTAAAGTAGCGAGGGATT CTCTTTGTAGTCTCATTTTGGGTTCCCCTGCTGGTAAGGTTTACTCCAAACTCAGACAAGTTTCTGCTAGACTAGCAGAGAGGTTTTGA
AA sequence Show only first row Show all	>Lus10027099 pacid=23151535 polypeptide=Lus10027099 locus=Lus10027099.g ID=Lus10027099.BGIv1.0 annot-version=v1.0 MLPDAVNTPATTAAAKKRNVDLSPTLQQATAFASFISSLIGSIDLFPTREVQEQSESEGHSRAYIDFKSPGDVMVFAQYFNEEDDASSSHKAKSKPSRNG VATGNPDSKQPPSSSPSSLPRTKPTAPHLTIGGGSVRKKNLSPAMQSDSMEIETLTNGGAEASLPAKPQFEPLKAHEMSDGKVQFRKVSVPPHRYTPLKK AWLDIYTPVYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVQAFMFGFDVIDAVALLRMDELYVDTFEIKDVKTLHGEHLSRAIGRLSGKGGKT KFAIENATKTRIVIADKKIHVLGSFQNIKVARDSLCSLILGSPAGKVYSKLRQVSARLAERF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	0	1
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	1.7	0.8236
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	2.6	0.8680
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	4.2	0.7946
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	6.0	0.8350
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	8.7	0.7433
AT3G05560			Ribosomal L22e protein family ...		Lus10037498 [exp]	9.4	0.7980
AT1G18850			unknown protein		Lus10024247 [exp]	9.5	0.7436
AT5G41190			unknown protein		Lus10008488 [exp]	10.7	0.7953
AT1G18850			unknown protein		Lus10023616 [exp]	11.2	0.7629
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	15.0	0.7890

Compare expression of checked genes

Lus10027099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.