Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 111 / 9e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 110 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16610 73 / 1e-14 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G30700 73 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 72 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 72 / 2e-14 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 72 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 72 / 4e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 71 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G14730 70 / 2e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003509 [exp] 224 / 4e-74 AT1G22830 136 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009487 [exp] 228 / 1e-69 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 197 / 2e-59 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003508 [exp] 145 / 8e-41 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025488 [exp] 78 / 2e-17 AT1G71490 106 / 9e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035619 [exp] 74 / 5e-15 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 73 / 1e-14 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033946 [exp] 71 / 5e-14 AT4G18750 410 / 1e-132 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003233 [exp] 71 / 9e-14 AT4G35130 775 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 123 / 5e-32 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 74 / 4e-15 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 74 / 6e-15 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 72 / 3e-14 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 72 / 4e-14 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G216100 [exp] 70 / 1e-13 AT2G37310 724 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 70 / 2e-13 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G030200 [exp] 70 / 2e-13 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G181800 [exp] 69 / 2e-13 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 69 / 4e-13 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027100 pacid=23151555 polypeptide=Lus10027100 locus=Lus10027100.g ID=Lus10027100.BGIv1.0 annot-version=v1.0 ATGTCGCCTTCTTCGCGTCGAGTGGCACTCAAGGGCTTGTTATCCGTCGCTGAGATACATAAGTTTATACCTAGCAAGTGGAAGCAAATTGTTGCTGCTA AGCCTGCTGATACTGTTATCATCGAGCCTCTAGTTCGCCACAATAATGCTGTTAAGGATGGATACATCATGTTAAGCTTTTTAGTAACCTGCATTAAGGA TCTCACAAGCCATGGGAATCTGTGCAAGGCATTTGAAACATTTACGTTAGTGCAACGACATGCTCAAACTCATCATGACTCGTTCGTGAATTCGATTTCG TGCCTTTTGTTTGCTTGTGCTTATCGGAAATCACCTTGGCAAGGAGGAAGACGGCTCCACGGGCATATGATCTCATTAGGTTATAGAAAGATCCTGTCTA AGCATCTTCCATATTCAGAGATGTTGCTTGCCAAGGTTGAGCCCAATTACGTCACTATCGCGAGCATTCTTCGGATCTATGCTCGAATTATGGATCTACG ACACGGAAAGGAGTTCCATTCCTACATTCTAAAATGTCTGGCGGTTAATAATTATTTAATAATATGGAACGCGCTTGTCCAGATGTTTGCCAGGTCCGGG AAGCTTCCAGAAGCTAGAAAATTGTTCGATACGATGAGCACCAAGGACGAGGTAACCTACAGGTCATTAGTATCTGCGTATGGGATGCAAGGCGATGGGA AAACTGCCTCAAACTCCTCAAGGAAATGA
AA sequence Show only first row Show all	>Lus10027100 pacid=23151555 polypeptide=Lus10027100 locus=Lus10027100.g ID=Lus10027100.BGIv1.0 annot-version=v1.0 MSPSSRRVALKGLLSVAEIHKFIPSKWKQIVAAKPADTVIIEPLVRHNNAVKDGYIMLSFLVTCIKDLTSHGNLCKAFETFTLVQRHAQTHHDSFVNSIS CLLFACAYRKSPWQGGRRLHGHMISLGYRKILSKHLPYSEMLLAKVEPNYVTIASILRIYARIMDLRHGKEFHSYILKCLAVNNYLIIWNALVQMFARSG KLPEARKLFDTMSTKDEVTYRSLVSAYGMQGDGKTASNSSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22830			Tetratricopeptide repeat (TPR)...		Lus10027100 [exp]	0	1

Compare expression of checked genes

Lus10027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.