Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55760 390 / 1e-136 BTB/POZ domain-containing protein (.1) AT1G21780 283 / 3e-94 BTB/POZ domain-containing protein (.1.2) AT2G40450 64 / 7e-12 BTB/POZ domain-containing protein (.1) AT3G56230 61 / 2e-10 BTB/POZ domain-containing protein (.1) AT5G48510 60 / 2e-10 BTB/POZ domain-containing protein (.1) AT3G03740 59 / 1e-09 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT1G01640 56 / 6e-09 BTB/POZ domain-containing protein (.1.2) AT5G19000 54 / 9e-08 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT4G08455 52 / 1e-07 BTB/POZ domain-containing protein (.1) AT4G04090 50 / 3e-07 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008348 [exp] 539 / 0 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10042717 [exp] 300 / 4e-100 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 297 / 6e-97 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10042763 [exp] 62 / 7e-11 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 62 / 1e-10 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10041235 [exp] 52 / 2e-07 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 52 / 2e-07 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10003365 [exp] 49 / 3e-06 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 49 / 3e-06 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468700 [exp] 451 / 2e-160 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G178400 [exp] 285 / 5e-95 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 283 / 5e-94 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.013G083800 [exp] 64 / 2e-11 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 60 / 4e-10 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 60 / 5e-10 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 55 / 4e-08 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 51 / 5e-07 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.019G039500 [exp] 49 / 2e-06 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 45 / 5e-05 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10027101 pacid=23151521 polypeptide=Lus10027101 locus=Lus10027101.g ID=Lus10027101.BGIv1.0 annot-version=v1.0 ATGAATAACGATTCTGCTTACAGAGTTGAAACTACTTCACGCCTCGCCCAATGGCGGATCGACAACCTCGCCTCTTGCTCCTACCGCAAATCCGACCCTT TCAAGATCGGCAACTGGAATTGGCATTTGACAGTGGAGAAGAACAGGGTGTTGTTTGTTAAATTATACCCAGAGGTGTCCAATCTCACGAGGGAAAATCC TCCCATTGCATCCTTTGTTATTCGGGTTGTTTGCTCCGTCGGGAATCGCAAGTCCTTGATTCATCCTGAAATCACAGACAGGCAACTGAAGAACAACGAC GATTTCGTTTGGGCGATTGAGGTCCCATTGACAGGGAAATTCATCATCGACGTCGAATTTCTTGACCTCAAGTCTGCATCACCAGACGGAGGAGAACCAT GCTCCATATGGGGAGGAGGAGCGACCGAGAAGCGATCGAGTGAAACAGCGCTCGCATCCCTAGGAAGAATGTTGACACAAAGCATCCACACCGACATAAC CATCAACACTTCAGACGGAAGCAGCATCGGAGCACACCGCGCACTCTTGGCTGCAAGATCGCCCGTGTTCTGCAGCATGTTCGCACACGACCTCAAGGAG AAAGAGCTCTCCACAATCGAAATCTCCGACATGTCGATCGAGGCTTGCCAGGCCTTCCTCAACTACATATACGGTAACATCCAGCACCACGAGTTCATTG CTCACCGGCTCGCGCTGCTCCACGCTGCTGATAAGTACGACATATCCGACCTGAAGGAAGCGTGCCACGAGAGTCTGCCCTCCTCCCACCATATCTGCAG CAAACAGTATACTGTAGCTTTTTCAGACCTGATTCTTTGTGGAGAAGCAGTGATTGAAAATTTGTTGTACATAGATTGGATTGGATTTGGATTTGATTAC ATAGAGAACAGTGCCATACTTGCTAATCATATGTATTCTGTGAAAGAACTTATTACGATTGGAATGAAATGTAAATGA
AA sequence Show only first row Show all	>Lus10027101 pacid=23151521 polypeptide=Lus10027101 locus=Lus10027101.g ID=Lus10027101.BGIv1.0 annot-version=v1.0 MNNDSAYRVETTSRLAQWRIDNLASCSYRKSDPFKIGNWNWHLTVEKNRVLFVKLYPEVSNLTRENPPIASFVIRVVCSVGNRKSLIHPEITDRQLKNND DFVWAIEVPLTGKFIIDVEFLDLKSASPDGGEPCSIWGGGATEKRSSETALASLGRMLTQSIHTDITINTSDGSSIGAHRALLAARSPVFCSMFAHDLKE KELSTIEISDMSIEACQAFLNYIYGNIQHHEFIAHRLALLHAADKYDISDLKEACHESLPSSHHICSKQYTVAFSDLILCGEAVIENLLYIDWIGFGFDY IENSAILANHMYSVKELITIGMKCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	0	1
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	1.4	0.8890
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	2.0	0.8464
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	2.0	0.8499
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	3.2	0.8420
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	5.7	0.8187
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	7.1	0.8198
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	8.0	0.8087
AT5G18310			unknown protein		Lus10042520 [exp]	8.8	0.8264
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	10.5	0.8499
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	12.3	0.7978

Compare expression of checked genes

Lus10027101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.