Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59670 228 / 3e-69 unknown protein AT4G37440 109 / 4e-26 unknown protein AT3G50040 87 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008349 [exp] 678 / 0 AT3G59670 277 / 1e-86 unknown protein Lus10001409 [exp] 130 / 3e-33 AT4G37440 155 / 2e-42 unknown protein Lus10014864 [exp] 118 / 7e-29 AT4G37440 155 / 2e-42 unknown protein Lus10011519 [exp] 89 / 7e-19 AT4G37440 134 / 8e-35 unknown protein Lus10019305 [exp] 61 / 3e-10 AT4G37440 83 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127100 [exp] 330 / 2e-108 AT3G59670 377 / 2e-125 unknown protein Potri.005G144800 [exp] 172 / 1e-48 AT3G59670 181 / 6e-51 unknown protein Potri.007G051100 [exp] 162 / 4e-45 AT3G59670 178 / 4e-50 unknown protein Potri.019G112201 [exp] 91 / 5e-22 AT3G59670 98 / 7e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027104 pacid=23151512 polypeptide=Lus10027104 locus=Lus10027104.g ID=Lus10027104.BGIv1.0 annot-version=v1.0 ATGATGTTGGTCAAGGTAAAATCAGACGCCAAATTGGAAGTTACCAACAACGAAGAAGCAGAACCAGCACCAGCAGTGAGGATGGGCGGCAAGAGCATCA GGATTCCGGATGGTGAATTCAAGCCTTTGAAGAGAGGCATTGCGGTTCTGGACGATCCAGAAGCAGTTTTGGTTGATGTGGTGACGCTTACAGCAACCAT TCAGCAGCAGGATCATCATCTTCCTACTACTGACTTGGATGCAACTGAGCACTCCAGCTCTTTCGCCGACACGCTCTCGGACACCGACGAGAGATGCTTG TTGGGGAACAGTGAAGAAGGAGGCGGCGGAGAGGTTGAGTCTCAGTTCTTTGGTGGAGATGGGGATATTGATTCCCCCTTCGATGCTTTCAGCAGCTTGT TTTACTCCAGGAAGAAAAAGGTAACGAATCATTGGAGGAGCTTTATAAGGCCTCTCATGTGGCGTTGCAAGTGGGCAGAGCTTAAAATCATGGAGATTGA GTCTCAAGCACTCAAGTATTCTGGTGAACTTACAGCCTGTGAACACAGAAAACAGTCATCAATCTATCAGTCCATCCCTGATGGCTTCTGTTCCAAGGCT CTCCCATTTTTTAATGAATGTTATTATAGTAGAAAGTCCAAAAGGCGGCGAAAAAGAAAGAGGGTCGATGAAGCTGTGGATATGTCGTCGATCATATCTG ATCATCCCCTTTTTTCTTATCTTGAAAGCAAGAGGTCTATTACGGATGGAGCCTCCTTGGTCGATGACTTTGAACCAATAGGAACAGCATTAACAGACAC AAGGCCGGAAGGGAAAGACAAATTTGGCGATTCTAACGACGAGTTGTCATTTGCTTTTGGGAGCACTGATAACTACTACCTGGAGAACATGTTGTTAAAC ATTGAAGGGACGCACTCTCGAGTGCACAAGCTAAAGGATCAACTCGATGCGGTGATATCAAACAATGCCTCCAGATTCTCTTCCTGGGATAATCTGTGCC TTCTGGCAGCACCTTGTGATGAAGGACATACTAGTTCAGCTCCAAGTCCCGTCTTATCGGTAGGGTGTGGTGGGGAAACACTAGCTCACCATACCTCTGG ATACGATATGAGCGACCTGGCCTTGCCCGAGAGTGCCATGTCAAGTTTCGGAGAGGCCATCCATGTACCCGATATCATCGAAAGCACGGTGGGACCGCTG TCAGTAGCTGATGTGACGTGCCATGAGCAGCAGCCTATGGGGAAGCAGTCGGGCGAAGATGTAAGTGTTAATGAATAA
AA sequence Show only first row Show all	>Lus10027104 pacid=23151512 polypeptide=Lus10027104 locus=Lus10027104.g ID=Lus10027104.BGIv1.0 annot-version=v1.0 MMLVKVKSDAKLEVTNNEEAEPAPAVRMGGKSIRIPDGEFKPLKRGIAVLDDPEAVLVDVVTLTATIQQQDHHLPTTDLDATEHSSSFADTLSDTDERCL LGNSEEGGGGEVESQFFGGDGDIDSPFDAFSSLFYSRKKKVTNHWRSFIRPLMWRCKWAELKIMEIESQALKYSGELTACEHRKQSSIYQSIPDGFCSKA LPFFNECYYSRKSKRRRKRKRVDEAVDMSSIISDHPLFSYLESKRSITDGASLVDDFEPIGTALTDTRPEGKDKFGDSNDELSFAFGSTDNYYLENMLLN IEGTHSRVHKLKDQLDAVISNNASRFSSWDNLCLLAAPCDEGHTSSAPSPVLSVGCGGETLAHHTSGYDMSDLALPESAMSSFGEAIHVPDIIESTVGPL SVADVTCHEQQPMGKQSGEDVSVNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59670			unknown protein		Lus10027104 [exp]	0	1
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	10.0	0.8947
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	17.3	0.8708
AT5G17160			unknown protein		Lus10038036 [exp]	22.0	0.8691
AT2G28130			unknown protein		Lus10016147 [exp]	22.1	0.8571
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	33.0	0.8628
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	33.8	0.8663
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024855 [exp]	35.4	0.8576
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	39.9	0.8452
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	40.8	0.8502
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	41.0	0.8622

Compare expression of checked genes

Lus10027104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.