Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31800 677 / 0 Integrin-linked protein kinase family (.1) AT2G43850 668 / 0 Integrin-linked protein kinase family (.1.2) AT3G59830 653 / 0 Integrin-linked protein kinase family (.1) AT4G18950 348 / 7e-114 Integrin-linked protein kinase family (.1) AT3G58760 318 / 4e-102 Integrin-linked protein kinase family (.1) AT1G14000 203 / 6e-59 VIK VH1-interacting kinase (.1) AT5G49470 140 / 1e-35 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 135 / 3e-33 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 133 / 2e-32 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 133 / 3e-32 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008350 [exp] 911 / 0 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 313 / 9e-100 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 219 / 9e-65 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 217 / 5e-64 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 203 / 7e-59 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 202 / 1e-58 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10004124 [exp] 132 / 4e-32 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 132 / 7e-32 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10027247 [exp] 132 / 9e-32 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007800 [exp] 704 / 0 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 684 / 0 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G064400 [exp] 335 / 6e-109 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 214 / 4e-63 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 214 / 6e-63 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 186 / 1e-52 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 171 / 3e-47 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.008G105100 [exp] 139 / 2e-34 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 137 / 1e-33 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 136 / 2e-33 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027107 pacid=23151625 polypeptide=Lus10027107 locus=Lus10027107.g ID=Lus10027107.BGIv1.0 annot-version=v1.0 ATGGACAACATAGCGTCGCAGCTCAAGAGGGGGATATCCAGGCAATTCTCCACGGGCTCTCTGAGGAGGACGCTGAGCCGGCAATTGACGAGGCAGTCCT CGCTTGAGCCGCGCCGGAACAACATGAGGTTCAGCTTCGGGAGGCAGTCCTCGCTTGATCCTATCCGTCGGAGTCCTGTCAGGTTGAAGGAGGAGCTGTT GGCAGTTCCGGAGAATCTCGACTGCACGATGCAGATGCTGTTTATGGCGTCCCGAGGAGACGCCAAAGGTGTCGAGGATTTGCTCAACGAAGGGATTGAT GTCAACAGCATTGACTTGGATGGGAGGACCGCTCTACACATTGCTGCTTGCGAGGGACATGCCGAGGTTGTCAAGCTTTTGTTGAGTCGTAAGGCCAATA TCGATGCTCGCGATCGCTGGGGTAGCACGGCATGTGTTGATGCTAAGTTCTACGGGAATGTAGAAATTTACAACATTCTGAAGGCTCGAGGGGCCAAAGT CCCGGTATCGACCGTTTTTCCCTTGCTTCTTCTTGTGATTAACTCTCTTCAGAAGAGTGTAGCTCTGTCTATAGAGATAATAATTACTGATCCATGTAAA CTTTTGATCATTTCTCAGAAAACCAGGAAGACACCGATGGCGGTTGCTAATCCTCGAGATGTCCCCGAGTATGAGCTCAATCCATTGGAACTTCAAGTCC GAAGGTCTGATGGCATCACAAAGGCAAGTTCTAATTTCTATGGGACGTATCAAGTGGCTAAGTGGAATGGTACAAAGGTGGCTGTAAAGATACTTGATAA GGATTGCTACTCTGATCCTGAGAGCATAAGCGCATTCAAACATGAACTTACCTTATTAGAGAAGGTTCGACATCCAAACGTCGTTCAATTTGTTGGAGCA GTTACTCAAAACATACCAATGATGATTGTTGTAGAGTATCAACCAAGGGGAGATCTAGGAAGCTATCTTCAAAAGAAGGGCCGTTTGTCGCCGTCAAAAA CTCTTAGATTTGCTCTTGACATTGCCAGGCATGTACAAGTTGAAATTCCGAAAATAGATTCTGCACCATTGCTGCAATATGCGTTTGAACTCAATGATAA TTTATTTCCCAACTGTGCCAGAAACATTATGCTGGATAGTGGTGGTCAGTTGAAGGTAGCTGGTTTTGGTTTGATAAAGCTGTCGCAGATATCAATGGAC AAAGCTAAAGTTTCACCAGGAACTCCATTGGAGCCCTCAAATGTATATATGGCGCCTGAAGTTTACAAAGACGAAATTTTCGACAGAACCGTGGATGCTT ACTCTTTTGGTGTTATTTTATATGAGATGATTGAAGGAGTGCAACCTTTCCACCCGAAGTCTGCTGAAGAGGCTGTTCAATTGATGGGTTCGGAGAAAAT GAGACCAGCATTCAAGGTCAAATCCAGACATTGTCCTCCAGATATGAAAGAGTTGATCGACGAATGTTGGCATCCAGAACCAGTTGCAAGGCCAACGTTC TCTGAGATCATTGTCCGATTAGACCGAATAGTTTCTCACTGTTCGAAACACGGGTGGTGGAAGGACACTTTCAAGCTTCCCTGGGCGTTGAAGAAGACCA GAACCCGCCGGCACTACGAGTGCCTTTCCTCCGGCTCCGGCGGCAACCTCCCTGCGGATTTCCACGTCAGCACCGACTACGTCCCAGATCGGTTTCACGG CGGCCATCACCGGCGGTACATGTCGGCGGATGGAGATTTGTCGAAATCGGAGCTTTACGAATCGCCGGGGAAGAAGCAGCAGGAGATGGCGAGGTTTCGG AGTCACAGGGGATTATTCGGCTGCGTCACGCTTGCAGAAGATTGA
AA sequence Show only first row Show all	>Lus10027107 pacid=23151625 polypeptide=Lus10027107 locus=Lus10027107.g ID=Lus10027107.BGIv1.0 annot-version=v1.0 MDNIASQLKRGISRQFSTGSLRRTLSRQLTRQSSLEPRRNNMRFSFGRQSSLDPIRRSPVRLKEELLAVPENLDCTMQMLFMASRGDAKGVEDLLNEGID VNSIDLDGRTALHIAACEGHAEVVKLLLSRKANIDARDRWGSTACVDAKFYGNVEIYNILKARGAKVPVSTVFPLLLLVINSLQKSVALSIEIIITDPCK LLIISQKTRKTPMAVANPRDVPEYELNPLELQVRRSDGITKASSNFYGTYQVAKWNGTKVAVKILDKDCYSDPESISAFKHELTLLEKVRHPNVVQFVGA VTQNIPMMIVVEYQPRGDLGSYLQKKGRLSPSKTLRFALDIARHVQVEIPKIDSAPLLQYAFELNDNLFPNCARNIMLDSGGQLKVAGFGLIKLSQISMD KAKVSPGTPLEPSNVYMAPEVYKDEIFDRTVDAYSFGVILYEMIEGVQPFHPKSAEEAVQLMGSEKMRPAFKVKSRHCPPDMKELIDECWHPEPVARPTF SEIIVRLDRIVSHCSKHGWWKDTFKLPWALKKTRTRRHYECLSSGSGGNLPADFHVSTDYVPDRFHGGHHRRYMSADGDLSKSELYESPGKKQQEMARFR SHRGLFGCVTLAED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31800			Integrin-linked protein kinase...		Lus10027107 [exp]	0	1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	2.0	0.9367
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	8.6	0.8954
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10012273 [exp]	8.9	0.9175
AT2G32760			unknown protein		Lus10016662 [exp]	9.2	0.9202
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	9.2	0.9175
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	10.4	0.9275
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	10.8	0.8996
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	13.6	0.9293
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	16.7	0.9175
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	18.2	0.9095

Compare expression of checked genes

Lus10027107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.