Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43990 94 / 1e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008351 [exp] 646 / 0 AT2G43990 93 / 1e-19 unknown protein Lus10027992 [exp] 166 / 5e-46 AT2G43990 86 / 1e-17 unknown protein Lus10008165 [exp] 140 / 2e-37 AT2G43990 74 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145400 [exp] 137 / 6e-35 AT2G43990 252 / 3e-74 unknown protein Potri.017G002200 [exp] 128 / 4e-32 AT2G43990 246 / 3e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027108 pacid=23151491 polypeptide=Lus10027108 locus=Lus10027108.g ID=Lus10027108.BGIv1.0 annot-version=v1.0 ATGAAAAAATCAGTGGAGACTCATGTAAGTAGGCTGAAGTCTGGATCTGGAGATTTTAATCCTGCTCGGGTTGATTTGGATTCGAATTCAACTCCTTTAA GAACTACTGGAAATTTGTCTGGTTTGAATGTTACTAAGGGTAGTAATTCAGAGAGTAGCAACACGACGAAAACGCCGGATTCAGAGAGTAGCAACACGAC GAAAACGCCGCCGCTTCATAGCACGGTATCCCCAGAGATTCAGTGTCCAGCTTCAGTGATTTCGACGGCGAAGAAGAGTGTGACCATTACACCGGTTTGC TATGGTGCTGGTCATCTTTTGTCTGGGGTTACAGACAAGAGGAAGTGTAGGCCTAGAGGTTTACTTGTTGTTGGAGAAGAAATAGTCGTCGATAAGTTCG TAATCGATGATCATGATTCCGGTGGTGATGTTCTAGTTGATGGCAGAAATACTGCAATTGATGATCTTTCACCATCTTCATTGCCTGTCAAGGCTTCAAT GCATTGGCTTATTCATTCGCCTGGTAATAGCAAGGATTCTCCTGAATTTGGAGGGTTTCCAGCTGCAAATCTGAATTCTGATATGGACATTTTTCCTCTG AGTTCTGATAGGCATCCATTCTCGATGGATTTGTTAAGCAGAGTGAATGTAGTGGAAACCCCGGAATCCGACTCTAGCTCCTCCAGAGTAAGAAACATTG TTACAAAGTGTTGGGGTTCCGAATTGGATTCAGTGGATAGAGATCTCCAAAAGCTTTTTAGCACACCAGCTACTACTCCCTCGCTTCGATTTAATGTATC TGCCACGACTTCTTCTGATCATGTCGATCTGATTCAGCTTCAGAAGTCTATAGACATCCGGGATGCTCGGCTTTTGAGTTCTACGTTGGATGATGTGTCG CGTTCCAAAGTTAGAATATCGTGGAGGGACGGATTGGTGAGTCGGATATTTGAATTGGACGAATTTGATTGCTGTAGATGTTTATCTGATGAAGAAGACG ACATGGAGGAGGAGGAGGAGAATGACTGCAACAATGGCCACCTAGAGGAATCTCATCAAACTCGTAAACTCGACATCGGAAATCCTGAGCACTGCTTAGA TAGAAATGTGAAAGATGATGTTGCTTCGAAGGTGTGTTGTTTACCTGCTGCTGCAGAGTCTATGGCGATAAGTAGTGATGGAGGTGCTCTATTTCAATCA GACGACTCGGATTGGACACAGTGTTACAAGAACTAG
AA sequence Show only first row Show all	>Lus10027108 pacid=23151491 polypeptide=Lus10027108 locus=Lus10027108.g ID=Lus10027108.BGIv1.0 annot-version=v1.0 MKKSVETHVSRLKSGSGDFNPARVDLDSNSTPLRTTGNLSGLNVTKGSNSESSNTTKTPDSESSNTTKTPPLHSTVSPEIQCPASVISTAKKSVTITPVC YGAGHLLSGVTDKRKCRPRGLLVVGEEIVVDKFVIDDHDSGGDVLVDGRNTAIDDLSPSSLPVKASMHWLIHSPGNSKDSPEFGGFPAANLNSDMDIFPL SSDRHPFSMDLLSRVNVVETPESDSSSSRVRNIVTKCWGSELDSVDRDLQKLFSTPATTPSLRFNVSATTSSDHVDLIQLQKSIDIRDARLLSSTLDDVS RSKVRISWRDGLVSRIFELDEFDCCRCLSDEEDDMEEEEENDCNNGHLEESHQTRKLDIGNPEHCLDRNVKDDVASKVCCLPAAAESMAISSDGGALFQS DDSDWTQCYKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43990			unknown protein		Lus10027108 [exp]	0	1
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	6.5	0.9060
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	6.9	0.9216
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	10.7	0.9164
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	11.0	0.9120
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	12.7	0.9140
AT1G71760			unknown protein		Lus10030260 [exp]	19.1	0.9046
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	24.9	0.8900
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	28.9	0.9088
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	31.7	0.8987
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	32.5	0.9038

Compare expression of checked genes

Lus10027108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.