Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13330 1558 / 0 PA200 proteasome activating protein 200 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008354 [exp] 2064 / 0 AT3G13330 2607 / 0.0 proteasome activating protein 200 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470600 [exp] 1722 / 0 AT3G13330 2595 / 0.0 proteasome activating protein 200 (.1) Potri.011G167700 [exp] 1702 / 0 AT3G13330 1687 / 0.0 proteasome activating protein 200 (.1) Potri.011G167650 [exp] 736 / 0 AT3G13330 722 / 0.0 proteasome activating protein 200 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11919 [flax] [poplar] DUF3437 Domain of unknown function (DUF3437)
Representative CDS sequence Show only first row Show all	>Lus10027111 pacid=23151590 polypeptide=Lus10027111 locus=Lus10027111.g ID=Lus10027111.BGIv1.0 annot-version=v1.0 ATGCACCTGTACAATGCATGGCTGCCCCCTCCAGTTGCGGAGGAGACGAACAAGGAAGGAGAATCCTTCTCCCGCGTCGTCCACTCCATCAGAAGCGCTT ACAATCCCGACGATCCTGATTCCGTTTACGCCACTCTCAAATGGATTTCCGTCCTTGATATCTTCGTGAAGGCCAAGAGCGATGTCGCCTTGGAAGATGT CACGGCAGTGGTGGAAATTGGGCTGGAGTTGTTCAGTGTGTCTCAGGACAAGCTTTATGCTCAGGTTAGATGGGGAAATATTTTGGTGAGATTGCTCAAC AAGTACAGAAAGAAGTTGTCTCTGAAAGTTCCATGGCGCCCTCTATACGACACACTTGTTCACACTCACTTCTCAAGGAGCACTGGTCCAGAAGGCTGGA GGCTGAGGCAGCGCCATTTCTCAACTGTCACTTCTCTGGTTAGATCCTGCCGGAGGTTCTTTCCTGCTGGTTCGGCCGCTGAAATTTGGTCTGAGTTCAG TTCTCTACTGGAAAATCCGTGGCATAATTCATCATTTGAAGGATCTGGGTTTGTGCGACTGTTCCTTCCCACAAACTTGGATAACCAGGATTTTTATACC ATTGATTGGGTAAAAAAGAGTATGGACCTGTGGGACTCTATGCCGAATTGCCAATTCTGGAACAGCCAGTGGGCAGCTGTAATAGCTCGGGTCATAAAGA ACTATGAGTTCATTGATTGGGAGTCCTTCTTACCGACACTGTTCACTCGGTTCTTAAACATGTTTGAGGTTCCAGTGGCAAATGGAAGTGGATCATATCC CTTTCCTGTCGATGTTCCAAGAAATACAAGATTCTTATTTTCAAACAAAACAGTCACCCCGACTAAGGCTATTTCCAAATCGATTGTCTATCTACTGAAG CCTGGCAGTTCAACAGAAAAATACTTTGAGAAATTAGTCAACCTCTTAGAACAGAGCAAAGATAATATACAAGCAAACCTCTGTCTGGGAAGATCAGAGA GGATTGCATTTGTCAATATATTGCTAAAGTTAATTGATCGCGGACAATACAGCAAGAATGAGCATCTGTCTGAGACTGTAGCTGCAGCGACTTCTATCCT GTCTTATGTGGAACCCTCACTAGTTCTACCACTCTTAGCATCTCGATTCCATCTGGCTCTGGAGACGATGACTGCCACCCACCAGTTGAAAACTGCTGTG ATGTCAGTGGCATTTGCAGGGCGCTCATTATTTCTCACATCCTTATCAACCTCGGCGAAAGAGCTTGACCTTGCTGGTGATAATGAGACACTCATTGATC TACTGATGATTTCATTATCCAATGCATTACTTGGCATGGATGCTAATGATCCTCCGAAAACTTTGGCAACCATGCAGCTGATTGGTTCAATATTTTCTAA TATTTCTACTTTGGATGATAGCATGGATGACCTGTCATTCATGTCAATGATCCGCATTTCTGAGTGGTTAGATGAGTTCTTGTGTCGGTTGTTCTCCTTA CTTCAGCATTTGGAACCAAGCAGTGTTGTTAATGAAGGTTTACATTCAACATCAACATCAGGGACATTTTTAGTTGAAGAGGGTCCATATTACTACTGTA TGCTTGAAATCTTGCTTGGAAGGCTTTCAAAACCACTGTACAATCAGGCTTTGAAGAAAATTTCGAAGTTTGTAAGGACAAATATTCTTCCTGGTGCAAT TGCAGAGGTTGGCTTGCTTTGTTGTGCCTGTGTTCACTCGAACCCGGAAGAGGCAGTTTCAGCTCTCGTGGAGCCAATGTTGTCTGCTGTTATATCTTCT CTGAAAGGAACACCATCAACAGGATTTGGAGGAAGGGGAATCCTTGATGCATCAATTTCATCGAAGGCAAAGCCAACATTGTCTCCAGCTCTTGAAACAT CAATTGATTGTCAATTGAAAATACTGTCAGTTGCTATCAACTACGGAGGTTCCGTGCTTCTTCCTTTCAAGGATAAATTCATCGAAGCTGTCACTTCTGC TTTCGAATCTCCCTCTTGGAAGGTTAACGGAGCTGGTGATCATCTTCTTAGGTCCCTAATGGGAAGTCTCGTTCTTTATTACCCTGTAGATCAATACAGG TGCATTTCGCAGCATCCTGCTGCTACGGCATTGGAAGAGTGGATTGGCACAAAAGATTATACCAATGAGGACCAGCCGATGGCACCCAAGTGGCATGTTC CAAATGATGCGGAAGTTCAATTTGCAAATGAACTTTTGAACCTTCATTTTCAATCAGCTTTAGATGATCTCTTGAGGATATGCCGAGATCGCATCCATTC CGACCCAGGCAATGAGAAAGAGCACTTGAAAGTGACTCTTCTGCGCATCGATTCTTCTCTGCAAGGGGTTTTATCTTGCTTACCTGATTTCAAGCCATCC CTCAGAACTGGGGTTGTTGGCGATCAAAATCACATGTCCTTTCTGATAGCTGGAGCAACAGGTGCAACTGTTGGCAGCCCTGAACTACGGGAAAAGGCTG CTGAGATTATACACAATGCTTGCCAATATCTGCTGGAGGAAAAATCAGATGATAGCATTCTATTGATACTCATTATCCGGATAATGGATGCGTTAGTAAA TTACGGAAGTTTGGAGTATGATGAATGGTCAAATCACAGGCAGGCATGGAAGTTGGAATCTGCTGCTATCATAGAACCTCCAATAAACTTTATAGTTTCA TCTCATTCTAAAGGGAAAAAGAGACCTCGATGGGCCCTTATTGACAAGGCCTACATGCATAATACATGGAGATCGTCGCAATCATCCTACCATCTTTTCC GTACGAGTGGAAGTTTCGCTCCCTCTGACCATGCAGCTGTTTTGATCGCTGATCTACTAAATCTTTCTCAGCATAGCTATGAAACTGTTCGAGGACTTGC TGGAAAATCTCTGCTGAAGATGATTAAGAGATGGCCATCTATGATCTCCAAGTGTGTGCTTTCTCTTACTGAAAATCTGAAGAACCCAAGTGCTCCTGAA TGTGCAGTCTTAGGTTCTTGTGCTGTACTCTCCACTCAAACAGTTCTCAAGCATTTGACAACGGATCCAAAGTCTTTCTCTTCATTTCTCCTTGGAATTC TGTCGAGCTCTCATCACGAGTCCTTGAAATGCCAGAAGGCAATTAATGAGAAAATTTTAGTGAATACCTTCTTAAAAGAATCACCATACAAACTTTCGGC CGAGGATCAAAATGCTGCTATGGAAGTGCTGGGTACCAATACCAAATCTTCCCTTGAAGGGGCGCTGGGTGAAATTTTTCAGGAGGAAGGATTCTTTAAT GAGACTTTGAATAGCCTATCACATGTTCATATTATCACTGATAACGAGAGTTCTTCCAGAGGAAATCATGGGAGTTCTTCTTTCCAAAGCTTGGCAGATA AATCAATCACCCGGTTTTATTTTGATTTTTCATCCTCATGGCCTCGTACACCTAGCTGGATCTCTCTATTAGGAGGGGATAGCTTTTACCCGAGCTTTGC ACGAATTTTCAAGCGTCTGGTGCAAGAATGTGGCATGCCCATTCTGATGGCACTAAGAAGCTCATTGGAAGAATTTGCAAATGCCAAGGAAAGGTCTAAG CAGTGTGTTGCAGCAGAAGCCTTCGCAGGTGTGTTGCACTCTGATTTTGATGGTCTTTCAGGAGCGTGGGACAGCTGGATGATGGGTCAGTTACAGAGTA TTATTCTTGGGCAGTCGGTGGAGTCTATACCTGAGTGGTCAGCTTGCATACGGTATGCAGTTACTGGGAAAGGGAAGCATGGTACAGGAATTCCCCTTCT TAGACAGAAGATTTTGGACTGCTTGATAACACCCCTACCTCCTGCAGTAACAACTACTGTAGTCGCTAAGCGTTATACTTTTGTTTCTGCTGCACTTATA GAGATATCCCCACATAAGATGTCTGTGACTGAAATGGAGGTTCACAAAAAACTCTTGGATGAGTTGCTTGCAAACATGTGCCATTCATCAGCCCAAGTGA GGGAAGCTGTAGGAGTTAACCTCTCCATATTATGCTCTAATATTCGCCTTCATGCATCAAACTCCGTTCAAGAGGCTGACCATGACAATGACAGCCCATT GAAAACAGAAAATTGGGCTGTGTTACTCACAGAACGAGCATCTGAGATGGTCACGAGTATCCAGAATACTAGTCCATCAGACTTGGGGACGGCTGCTCAG TCCAGTTCTGATAATGTCACATTGAATGGAGATATACGAGATGATGTTAAGTGGATGGAAACGCTATTTCATTTTATTGTCTCAACTATGAAGTCTGGAA GATCATCTTGTTTGGTTGATGTCATAGTCAGATTCATCTATCCTGTCATTGCATTACAGGAAACGTCAAATAAAGATTTGTCAACTCTGGCCAAGGCTGC TTTCGAGTTGCTAAAGTGGAGAGTCTTTTTGGAACCCCATCTCCAGAAGGTCGTTGAAGTCATTCTTTCTTCTTCTACTGATTCCAATTGGCGGACTAGA TCAGCTACTCTTACGTATCTACGTACGTTTATGTATAGGCATACTTACATACTCTCCAAAGAGGAAAAACAAAAAATTTGGAAAACTGTGGAGGGTCTTC TGGGAGACAATCAAGTAAGGGAGCATGCTGCAGCAGTTCTTGCAGGTCTAATGAAAGGTGGAGATGAGGACCTTGCTTGTGATTTCCGTGAGAGAGCTTT AGCACAGGCAAATACCTTGCAAAAGATGAAAAGGCAGAGGAATCAAAGAAATGGACAATCCATATCGTCAATCCATGGTGCTGTACTTGCCCTTACGGCT TCAGTATTATCGGTGCCATATGATATGCCCGGTTGGTTGCCAGAGCATGTGACTCTACTGGCGCGTTTCGCAGCAGAGCCTTCGCCTGTAAAATCTACAG TCACGAAAGCAGTTGCCGAGTTCCGGAGGACTCACGCAGACACATGGACTTTTCAGAAGGATCAGTTCACCGAAGAGCAACTAGAGGTTCTCGCCGATAC ATCGTCTTCATCCTCGTACTTCGCATGA
AA sequence Show only first row Show all	>Lus10027111 pacid=23151590 polypeptide=Lus10027111 locus=Lus10027111.g ID=Lus10027111.BGIv1.0 annot-version=v1.0 MHLYNAWLPPPVAEETNKEGESFSRVVHSIRSAYNPDDPDSVYATLKWISVLDIFVKAKSDVALEDVTAVVEIGLELFSVSQDKLYAQVRWGNILVRLLN KYRKKLSLKVPWRPLYDTLVHTHFSRSTGPEGWRLRQRHFSTVTSLVRSCRRFFPAGSAAEIWSEFSSLLENPWHNSSFEGSGFVRLFLPTNLDNQDFYT IDWVKKSMDLWDSMPNCQFWNSQWAAVIARVIKNYEFIDWESFLPTLFTRFLNMFEVPVANGSGSYPFPVDVPRNTRFLFSNKTVTPTKAISKSIVYLLK PGSSTEKYFEKLVNLLEQSKDNIQANLCLGRSERIAFVNILLKLIDRGQYSKNEHLSETVAAATSILSYVEPSLVLPLLASRFHLALETMTATHQLKTAV MSVAFAGRSLFLTSLSTSAKELDLAGDNETLIDLLMISLSNALLGMDANDPPKTLATMQLIGSIFSNISTLDDSMDDLSFMSMIRISEWLDEFLCRLFSL LQHLEPSSVVNEGLHSTSTSGTFLVEEGPYYYCMLEILLGRLSKPLYNQALKKISKFVRTNILPGAIAEVGLLCCACVHSNPEEAVSALVEPMLSAVISS LKGTPSTGFGGRGILDASISSKAKPTLSPALETSIDCQLKILSVAINYGGSVLLPFKDKFIEAVTSAFESPSWKVNGAGDHLLRSLMGSLVLYYPVDQYR CISQHPAATALEEWIGTKDYTNEDQPMAPKWHVPNDAEVQFANELLNLHFQSALDDLLRICRDRIHSDPGNEKEHLKVTLLRIDSSLQGVLSCLPDFKPS LRTGVVGDQNHMSFLIAGATGATVGSPELREKAAEIIHNACQYLLEEKSDDSILLILIIRIMDALVNYGSLEYDEWSNHRQAWKLESAAIIEPPINFIVS SHSKGKKRPRWALIDKAYMHNTWRSSQSSYHLFRTSGSFAPSDHAAVLIADLLNLSQHSYETVRGLAGKSLLKMIKRWPSMISKCVLSLTENLKNPSAPE CAVLGSCAVLSTQTVLKHLTTDPKSFSSFLLGILSSSHHESLKCQKAINEKILVNTFLKESPYKLSAEDQNAAMEVLGTNTKSSLEGALGEIFQEEGFFN ETLNSLSHVHIITDNESSSRGNHGSSSFQSLADKSITRFYFDFSSSWPRTPSWISLLGGDSFYPSFARIFKRLVQECGMPILMALRSSLEEFANAKERSK QCVAAEAFAGVLHSDFDGLSGAWDSWMMGQLQSIILGQSVESIPEWSACIRYAVTGKGKHGTGIPLLRQKILDCLITPLPPAVTTTVVAKRYTFVSAALI EISPHKMSVTEMEVHKKLLDELLANMCHSSAQVREAVGVNLSILCSNIRLHASNSVQEADHDNDSPLKTENWAVLLTERASEMVTSIQNTSPSDLGTAAQ SSSDNVTLNGDIRDDVKWMETLFHFIVSTMKSGRSSCLVDVIVRFIYPVIALQETSNKDLSTLAKAAFELLKWRVFLEPHLQKVVEVILSSSTDSNWRTR SATLTYLRTFMYRHTYILSKEEKQKIWKTVEGLLGDNQVREHAAAVLAGLMKGGDEDLACDFRERALAQANTLQKMKRQRNQRNGQSISSIHGAVLALTA SVLSVPYDMPGWLPEHVTLLARFAAEPSPVKSTVTKAVAEFRRTHADTWTFQKDQFTEEQLEVLADTSSSSSYFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	0	1
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	1.0	0.9686
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028660 [exp]	6.6	0.9412
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	9.5	0.9306
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	10.4	0.9470
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	10.4	0.9415
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	11.4	0.9348
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	11.6	0.9320
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	13.0	0.9313
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10000969 [exp]	14.2	0.8997
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	15.9	0.9368

Compare expression of checked genes

Lus10027111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.