Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56130 554 / 0 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 98 / 2e-22 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 75 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 72 / 4e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 72 / 1e-13 transducin family protein / WD-40 repeat family protein (.1.2) AT5G52820 69 / 9e-13 WD-40 repeat family protein / notchless protein, putative (.1) AT5G08390 68 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 66 / 7e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 66 / 9e-12 TAF5 TBP-associated factor 5 (.1) AT5G23430 65 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008356 [exp] 624 / 0 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 91 / 4e-20 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10004167 [exp] 78 / 8e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 77 / 2e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 73 / 2e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 72 / 6e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 72 / 6e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 71 / 1e-13 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 70 / 3e-13 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470900 [exp] 570 / 0 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 94 / 4e-21 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 94 / 5e-21 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 85 / 1e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 74 / 1e-14 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 72 / 6e-14 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G145800 [exp] 71 / 8e-14 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 72 / 9e-14 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 68 / 1e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.010G255400 [exp] 68 / 2e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027113 pacid=23151627 polypeptide=Lus10027113 locus=Lus10027113.g ID=Lus10027113.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAACAATTCCCTTCAAGAATTTGCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTGCATTCGGTCGCTTGGAATTGTACCGGCACCA AGCTCGCTTCTGGTTCCGTTGATCAAACTGCTCGAGTTTGGCACATTGAACCCCACGGCCATGGGAAAGCTAGAGACATTGAGCTGAAAGGGCACACTGA TAGTGTGGATCAGCTTTGTTGGGACCCTAAACATGCTGATCTTATTGCAACAGCATCTGGAGACAGGACTGTTCGTCTTTGGGATGCTCGTGGGAAATGC TCTCAGCAGGCAGAACTTAGCGGAGAAAATATAAACATCACCTACAAACCAGATGGTACCCAAGTAGCTGTTGGTAATAGGGACGATGAACTGACAATTT TGGATGTTCGGAAATTTAGAACAATTCATAACCACAAGTTTAATTATGAGGTGAATGAGATTGCTTGGGATATGACTGGAGAGATGTTCCTTTTGACGAC TGGAAATGGCACCGTTGAAGTACTTAAATACCACCCAGAGCTCAAACCAATGGACACCCTCATGGCTCATACAGCAGGTTGCTATTGCATTGCCATTGAT CCAAAAGGAAGATATTTTGCTGTGGGGAGTGCTGATTCATTAGTCAGTCTTTGGGATATTTCAGAGATGCTCTGTGTCCGGACATTTACCAAACTAGAAT GGCCTGTGAGGACGATAAGCTTCAATCACACAGGAGAGTACATAGCTTCTGCAAGTGAAGACTTGTTCATTGACATATCCAATGTTCAAACTGGTCGATC AGTTCATCAGATCCCGTGTCGAGCAGCCATGAATAGTGTTGAGTGGAACCCCAAGTACAATTTGCTTGCATATGCTGGCGATGACAAAAAGCATCAGGCT GATGAAGGTAACACTACTCCTGTCCTCAGATTGGTAAAAGAGGTTCACTGTTGTTGA
AA sequence Show only first row Show all	>Lus10027113 pacid=23151627 polypeptide=Lus10027113 locus=Lus10027113.g ID=Lus10027113.BGIv1.0 annot-version=v1.0 MEEATIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKARDIELKGHTDSVDQLCWDPKHADLIATASGDRTVRLWDARGKC SQQAELSGENINITYKPDGTQVAVGNRDDELTILDVRKFRTIHNHKFNYEVNEIAWDMTGEMFLLTTGNGTVEVLKYHPELKPMDTLMAHTAGCYCIAID PKGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKKHQA DEGNTTPVLRLVKEVHCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	0	1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	1.7	0.8173
AT1G61470			Polynucleotidyl transferase, r...		Lus10035077 [exp]	6.7	0.7564
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	9.5	0.7744
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	10.9	0.7907
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	11.0	0.7141
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	13.3	0.7563
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	13.7	0.7814
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	14.7	0.7546
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	15.7	0.7801
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	17.2	0.7780

Compare expression of checked genes

Lus10027113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.