Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26470 162 / 1e-50 Calcium-binding EF-hand family protein (.1.2) AT3G24110 102 / 3e-27 Calcium-binding EF-hand family protein (.1) AT2G27030 50 / 2e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 50 / 4e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G56800 50 / 4e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT1G66410 50 / 4e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 50 / 4e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G43810 50 / 5e-08 CAM7 calmodulin 7 (.1) AT2G41090 49 / 1e-07 Calcium-binding EF-hand family protein (.1) AT5G21274 49 / 1e-07 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008357 [exp] 254 / 1e-86 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2) Lus10016675 [exp] 80 / 2e-18 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10039391 [exp] 51 / 3e-08 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10027283 [exp] 50 / 6e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 50 / 6e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 50 / 6e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 50 / 6e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 50 / 6e-08 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10041179 [exp] 47 / 4e-07 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471100 [exp] 171 / 3e-54 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) Potri.001G314900 [exp] 105 / 3e-28 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.017G054902 [exp] 65 / 1e-13 AT3G24110 70 / 3e-15 Calcium-binding EF-hand family protein (.1) Potri.008G159300 [exp] 51 / 2e-08 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 51 / 2e-08 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.006G026700 [exp] 50 / 5e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 50 / 5e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 50 / 5e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 50 / 8e-08 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 49 / 9e-08 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027114 pacid=23151552 polypeptide=Lus10027114 locus=Lus10027114.g ID=Lus10027114.BGIv1.0 annot-version=v1.0 ATGGGAGATGGTGCGCTGAAGGCTGAATCACCTAGAACGATACCAGAGACCAAGATCGAGTCTAAAATGCTTGATGCCATGAAGCGGAGAGAAGAAGCTG CTGGATGCTCCGTTCGATCCTTCAACAGCCTCCTCTTGAAGTTCCCCAAGATTGATGACAGCTTGAAGAACTGCAAAGCCATTTTTGAGGAATTTGATGT GGACTCCAATGGCACCATTGATCTCGGAGAGCTCAGAAAATGTTTCACCAAGCTGGAAATCTCTTTCACTGAAGAGGAGATCAATCAGCTCTTCGAGGCA TGCGATATTAATGACGACTATGGAATGAACTTTCATGAGTTCATAGTGCTTCTTTGTCTGGTTTATCTTCTCAAGGATGCTGCTGCTGCTGCTCCTGCTG CCGACGATAATGTACGTATCCAGAAATTACTTGATGCTGCTTGTTTATTTTTTTCAACTTCACATGGTAGAATAAGAAGTCGTGCCTTTTTGCTAGCAGC AGCTAGATTTTGA
AA sequence Show only first row Show all	>Lus10027114 pacid=23151552 polypeptide=Lus10027114 locus=Lus10027114.g ID=Lus10027114.BGIv1.0 annot-version=v1.0 MGDGALKAESPRTIPETKIESKMLDAMKRREEAAGCSVRSFNSLLLKFPKIDDSLKNCKAIFEEFDVDSNGTIDLGELRKCFTKLEISFTEEEINQLFEA CDINDDYGMNFHEFIVLLCLVYLLKDAAAAAPAADDNVRIQKLLDAACLFFSTSHGRIRSRAFLLAAARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26470			Calcium-binding EF-hand family...		Lus10027114 [exp]	0	1
AT1G07040			unknown protein		Lus10030795 [exp]	5.7	0.8517
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10009755 [exp]	10.2	0.8163
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	14.4	0.8068
AT1G07040			unknown protein		Lus10013272 [exp]	15.7	0.8419
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	16.3	0.8186
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	19.6	0.8080
AT1G31940			unknown protein		Lus10012117 [exp]	19.7	0.8297
AT4G13530			unknown protein		Lus10041074 [exp]	21.4	0.8159
AT3G53490			unknown protein		Lus10003989 [exp]	24.7	0.8327
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	26.5	0.8012

Compare expression of checked genes

Lus10027114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.